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The map label for this gene is ybhD [H]

Identifier: 66046394

GI number: 66046394

Start: 3794140

End: 3795048

Strand: Direct

Name: ybhD [H]

Synonym: Psyr_3165

Alternate gene names: 66046394

Gene position: 3794140-3795048 (Clockwise)

Preceding gene: 66046387

Following gene: 66046397

Centisome position: 62.26

GC content: 60.51

Gene sequence:

>909_bases
ATGCCCATCAATTTCGACCTCAACGACCTCCAGGCATTTCGTGCCGTAGTGGAGAACGGCAGCTTCCGCAAGGCCGCTGA
AACCGTGCAGATCACCCAGCCTGCGCTCAGTCGGCGGATAGAAAAGCTCGAGTCTGCACTGAACGTGAAGCTGTTCGAGC
GCACCACCCGCAGGGTCAGTCTGACTACGGTCGGCCGCGCATTTCTGCCTCAGGTCGAGCGCATTCTGGACGATCTGGAC
AGCGCATTGATGACCATCGAAGGCGTCGGCTCCACGCGAATGGGCAGCGTGACGATTGCCTGCGTGCCTTCAGCCGCCTA
TTACTTCATGCCGCAGGTCATCAGCGCTTTCCATCGGTTGTTTCCGAAAATCAGAATCCGGGTGATGGATGCCAGCGCCA
ACGAGGTCAACAGCGCAGTTGCCCTGGGCGAAGCCGATTTCGGGGTGAGTTTCAGCGGCAATCTGGCGCCGGAAGTGGAC
TTCGAACTGCTGCTGCAGGAACGCTACGTAATGGCCTGCAGGCGGGATCACCCGCTGGCTACGTGCGAAAGCGTCAGTTG
GGAAGAGATGTACCGCCATGACTACATCGCCCTGGACATCACCTCGGGTAATCGTCTGGTGCTGGATCAGGCGCTGGCAC
CTTCGCGCCCGCACAAGGAAAGCATCTGCGAAACCCGCCATGTCACGACGATGATCGGCCTGGTCGAAGCGGGCCTTGGC
GTGGCTGCGGTGCCCTCCATCGCCATGCCGATGACCGCTCACCCGTTTCTGGTGAGCGTGCCATTGGTTGCGCCCGAGGT
GATTCGCAACGTAGGGCTGATCAAGCGTCGTGGCAGGACCTTGACACCGGCAGCCCTCGAGCTGGAGCAACTGGTCAGGA
AAATGCCGTCACGCTCAGCGGGGAACTGA

Upstream 100 bases:

>100_bases
TTCTGCCCCCCACAGAACCCTCCCGCCTCCCCGCCTTGCGAGCTGCCGCACACAACCTGATATATTGATGCGCACCCCGT
ATCAATAGACTGACGTTCGA

Downstream 100 bases:

>100_bases
ATCCAGCCCGGTGGACTGCACCGTAGCCTGGGCTTTCGGGGATGCCAGGTAATCCAGCAACGCTTTCGCTTCTTTCGGGT
GCTCGGCATTGACCGGGATG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MPINFDLNDLQAFRAVVENGSFRKAAETVQITQPALSRRIEKLESALNVKLFERTTRRVSLTTVGRAFLPQVERILDDLD
SALMTIEGVGSTRMGSVTIACVPSAAYYFMPQVISAFHRLFPKIRIRVMDASANEVNSAVALGEADFGVSFSGNLAPEVD
FELLLQERYVMACRRDHPLATCESVSWEEMYRHDYIALDITSGNRLVLDQALAPSRPHKESICETRHVTTMIGLVEAGLG
VAAVPSIAMPMTAHPFLVSVPLVAPEVIRNVGLIKRRGRTLTPAALELEQLVRKMPSRSAGN

Sequences:

>Translated_302_residues
MPINFDLNDLQAFRAVVENGSFRKAAETVQITQPALSRRIEKLESALNVKLFERTTRRVSLTTVGRAFLPQVERILDDLD
SALMTIEGVGSTRMGSVTIACVPSAAYYFMPQVISAFHRLFPKIRIRVMDASANEVNSAVALGEADFGVSFSGNLAPEVD
FELLLQERYVMACRRDHPLATCESVSWEEMYRHDYIALDITSGNRLVLDQALAPSRPHKESICETRHVTTMIGLVEAGLG
VAAVPSIAMPMTAHPFLVSVPLVAPEVIRNVGLIKRRGRTLTPAALELEQLVRKMPSRSAGN
>Mature_301_residues
PINFDLNDLQAFRAVVENGSFRKAAETVQITQPALSRRIEKLESALNVKLFERTTRRVSLTTVGRAFLPQVERILDDLDS
ALMTIEGVGSTRMGSVTIACVPSAAYYFMPQVISAFHRLFPKIRIRVMDASANEVNSAVALGEADFGVSFSGNLAPEVDF
ELLLQERYVMACRRDHPLATCESVSWEEMYRHDYIALDITSGNRLVLDQALAPSRPHKESICETRHVTTMIGLVEAGLGV
AAVPSIAMPMTAHPFLVSVPLVAPEVIRNVGLIKRRGRTLTPAALELEQLVRKMPSRSAGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=280, Percent_Identity=40.7142857142857, Blast_Score=253, Evalue=9e-69,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=31.2714776632302, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=27.8388278388278, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=27.0627062706271, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=28.6195286195286, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=26.2096774193548, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787879, Length=286, Percent_Identity=27.2727272727273, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=27.4590163934426, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=30.8571428571429, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=28.0487804878049, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=24.8062015503876, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788296, Length=233, Percent_Identity=25.3218884120172, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87082132, Length=251, Percent_Identity=27.4900398406374, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=147, Percent_Identity=29.9319727891156, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789506, Length=260, Percent_Identity=25, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786508, Length=180, Percent_Identity=28.8888888888889, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=285, Percent_Identity=25.9649122807018, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=30.03663003663, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790208, Length=146, Percent_Identity=29.4520547945205, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367136, Length=245, Percent_Identity=24.8979591836735, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787806, Length=280, Percent_Identity=24.2857142857143, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789639, Length=259, Percent_Identity=23.1660231660232, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=124, Percent_Identity=34.6774193548387, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787128, Length=123, Percent_Identity=30.8943089430894, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788706, Length=171, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=248, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787589, Length=155, Percent_Identity=29.6774193548387, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786448, Length=122, Percent_Identity=31.9672131147541, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790783, Length=159, Percent_Identity=28.9308176100629, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33291; Mature: 33160

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINFDLNDLQAFRAVVENGSFRKAAETVQITQPALSRRIEKLESALNVKLFERTTRRVS
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
LTTVGRAFLPQVERILDDLDSALMTIEGVGSTRMGSVTIACVPSAAYYFMPQVISAFHRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
FPKIRIRVMDASANEVNSAVALGEADFGVSFSGNLAPEVDFELLLQERYVMACRRDHPLA
HHHEEEEEEECCCHHHHHHHEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC
TCESVSWEEMYRHDYIALDITSGNRLVLDQALAPSRPHKESICETRHVTTMIGLVEAGLG
HHCCCCHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
VAAVPSIAMPMTAHPFLVSVPLVAPEVIRNVGLIKRRGRTLTPAALELEQLVRKMPSRSA
HHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
GN
CC
>Mature Secondary Structure 
PINFDLNDLQAFRAVVENGSFRKAAETVQITQPALSRRIEKLESALNVKLFERTTRRVS
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
LTTVGRAFLPQVERILDDLDSALMTIEGVGSTRMGSVTIACVPSAAYYFMPQVISAFHRL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
FPKIRIRVMDASANEVNSAVALGEADFGVSFSGNLAPEVDFELLLQERYVMACRRDHPLA
HHHEEEEEEECCCHHHHHHHEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC
TCESVSWEEMYRHDYIALDITSGNRLVLDQALAPSRPHKESICETRHVTTMIGLVEAGLG
HHCCCCHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
VAAVPSIAMPMTAHPFLVSVPLVAPEVIRNVGLIKRRGRTLTPAALELEQLVRKMPSRSA
HHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
GN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]