Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 66046383

GI number: 66046383

Start: 3780456

End: 3781100

Strand: Reverse

Name: ycdC [C]

Synonym: Psyr_3154

Alternate gene names: 66046383

Gene position: 3781100-3780456 (Counterclockwise)

Preceding gene: 66046384

Following gene: 66046381

Centisome position: 62.05

GC content: 59.53

Gene sequence:

>645_bases
ATGACTCGGCATGACCCCACGGAAACGGGCACGGCAGTCACCCGACAGCGACGCGCGCCAAAGGGCGAAAAGCGCCGCGA
AGAACTGCTCGATGCAGCCCTGCAAGTGTTTTCCCTTGAAGGCTATACCGGCGCTTCGGTGGCCAAGGTGGCAGCCATCG
TCGGTATTTCCGTCGCCGGATTGCTGCACCATTTTCCGAGCAAGATCTCGCTGCTGATGGGCGTGCTGGAGCGACGCGAC
GAGGTCAACGGCCGAATTGCTGCCGAAGTCCGCACCGATAACACCCTGACCGGTCTGCTCGGCGGCTTGCGCGCGATCAA
CCGCTCCAACGCTACGGCGCCCGGCGTGGTACGTGCATTTTCGATCCTCAATGCGGAAAGTCTGCTGGAAAACCAGCCTG
CCTTTGAATGGTTCCAGACGCGCTACGAGCGTATTCACGCGCACTTGCTGGGACAGTTTTCGGCTTTGGTGGAGCGCGGG
GAGGTACGTGCGGATGTGGATCTGGACAAGATCATCCGGCAGATTCTGGCGATGATGGATGGTTTGCAGATTCAGTGGTT
ACGCTTTCCCGATCAGGTGGATCTGGTCGAGTGTTTCGATACCTACATTGCGCAGGTCGATGCAGCGGTAAGGGCTCGTC
CCTGA

Upstream 100 bases:

>100_bases
CTGCTGTACAAGATGAAATTGTCGAACAATCCGGCTCAATAGCGTTGCCAGCGCTTGCCTGAATGGTTAGGGTACGCGGC
TGTTCAAGAAGGAGCCTGAT

Downstream 100 bases:

>100_bases
GCCTTTATTTGTCCGTTTACCCTTCAGTCAGCTAACGCTTACTCAACGGTCTGCTTGAATACACCGCCGGTCTTGACCGG
TGGTTTCTCGACCAGGACCG

Product: regulatory protein, TetR

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR-Type Transcriptional Regulator; AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Regulator; Transcriptional Regulator Protein; Regulatory Protein TetR; Transcriptional Regulator TetR

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTRHDPTETGTAVTRQRRAPKGEKRREELLDAALQVFSLEGYTGASVAKVAAIVGISVAGLLHHFPSKISLLMGVLERRD
EVNGRIAAEVRTDNTLTGLLGGLRAINRSNATAPGVVRAFSILNAESLLENQPAFEWFQTRYERIHAHLLGQFSALVERG
EVRADVDLDKIIRQILAMMDGLQIQWLRFPDQVDLVECFDTYIAQVDAAVRARP

Sequences:

>Translated_214_residues
MTRHDPTETGTAVTRQRRAPKGEKRREELLDAALQVFSLEGYTGASVAKVAAIVGISVAGLLHHFPSKISLLMGVLERRD
EVNGRIAAEVRTDNTLTGLLGGLRAINRSNATAPGVVRAFSILNAESLLENQPAFEWFQTRYERIHAHLLGQFSALVERG
EVRADVDLDKIIRQILAMMDGLQIQWLRFPDQVDLVECFDTYIAQVDAAVRARP
>Mature_213_residues
TRHDPTETGTAVTRQRRAPKGEKRREELLDAALQVFSLEGYTGASVAKVAAIVGISVAGLLHHFPSKISLLMGVLERRDE
VNGRIAAEVRTDNTLTGLLGGLRAINRSNATAPGVVRAFSILNAESLLENQPAFEWFQTRYERIHAHLLGQFSALVERGE
VRADVDLDKIIRQILAMMDGLQIQWLRFPDQVDLVECFDTYIAQVDAAVRARP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23744; Mature: 23612

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRHDPTETGTAVTRQRRAPKGEKRREELLDAALQVFSLEGYTGASVAKVAAIVGISVAG
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LLHHFPSKISLLMGVLERRDEVNGRIAAEVRTDNTLTGLLGGLRAINRSNATAPGVVRAF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHH
SILNAESLLENQPAFEWFQTRYERIHAHLLGQFSALVERGEVRADVDLDKIIRQILAMMD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
GLQIQWLRFPDQVDLVECFDTYIAQVDAAVRARP
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRHDPTETGTAVTRQRRAPKGEKRREELLDAALQVFSLEGYTGASVAKVAAIVGISVAG
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LLHHFPSKISLLMGVLERRDEVNGRIAAEVRTDNTLTGLLGGLRAINRSNATAPGVVRAF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHH
SILNAESLLENQPAFEWFQTRYERIHAHLLGQFSALVERGEVRADVDLDKIIRQILAMMD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
GLQIQWLRFPDQVDLVECFDTYIAQVDAAVRARP
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA