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The map label for this gene is xpsF [H]

Identifier: 66046379

GI number: 66046379

Start: 3773948

End: 3775150

Strand: Reverse

Name: xpsF [H]

Synonym: Psyr_3150

Alternate gene names: 66046379

Gene position: 3775150-3773948 (Counterclockwise)

Preceding gene: 66046380

Following gene: 66046378

Centisome position: 61.95

GC content: 63.18

Gene sequence:

>1203_bases
ATGAGCCTGTTCAAGTACCGCGCGCTGGATGCTCAGGGCGCGCCGCAGAATGGCACGCTGGAAGCCCGCGATCAGGATGC
CGCCATTGCCGCGTTGCAGAAGCGTGGCCTGATGGTCCTGCAGGTCGATGCCGCCGGTCTGGGCGGTTTGCGCCGTGCGC
TGGGCAGCGGCTTGCTCAATGGTGCGGCGCTGGTCAGCTTCACCCAGCAGCTCGCGACGTTGCTCGGCGCCGGGCAACCG
TTGGAACGATCGCTTGGAATTCTGCTCAAACAGCCTGGACAACCGCAGACCAAGGCGTTGATCGAGCGCATCCGCGAACA
GGTCAAGGCTGGCAAGCCGCTGTCCGTGGCGCTCGAAGAAGAGGGCAGCCAGTTCTCGCCCCTCTATATAAGCATGGTCC
GCGCCGGTGAAGCCGGTGGCGCACTGGAAAGTACGCTGCGCCAACTGAGCGATTACCTGGAGCGCAGCCAGTTGCTGCGT
GGCGAGGTGATCAACGCGCTGATCTATCCGGCCTTTCTGGTAGTGGGTGTGTTGGGTTCCCTGGCGCTGTTGCTGGCCTA
CGTCGTGCCGCAATTCGTACCGATCTTCAAGGATCTCGGTGTGCCGATTCCATTGATTACCGAGGTCATTCTCAACCTCG
GAGAGTTTTTGAGCGACTACGGGCTGGCGGTGCTGGCGGGCCTGATCGCGTTGATCTGGGGCATGGCCATTCGCATGCGC
GACCCGCAGCGTCGCGAGCGCCGTGATCGCCGTCTGCTGGGCATTCGGGTGATCGGTCCTTTATTGCAACGCATTGAGGC
AGCACGGCTGACGCGCACCCTCGGTACGCTTTTGACCAATGGAGTGGCGTTGTTGCAGGCGCTGGTGATCGCTCGCCAGG
TCTGCACCAATCGTGCCCTGCAGGCGCAGGTCGAGCAGGCGGCCGAGTCGGTCAAGGGTGGCGGCACGCTGGCCAGCGCG
TTTGGTGCGCAGCCGTTGTTGCCGGATCTGGCTCTGCAAATGATCGAGGTCGGCGAACAGGCTGGCGAACTGGACACCAT
GCTGATGAAGGTCGCCGATGTGTTCGACGTCGAGGCCAAGCGCGGTATCGACCGCATGCTGGCCGCACTCGTGCCGGCGC
TGACGGTGGTGATGGCGGGCATGGTCGCGGTGATCATGCTGGCCATCATGCTGCCGCTGATGAGCCTGACCAGCAATATC
TGA

Upstream 100 bases:

>100_bases
GTGGCGGTTTGCGCACGCTGCATGAAGAAGGCCTGCGTCAGGCCGTGGCCGGGGTGACTTCGCTGGAAGAAGTGCTGCGC
GTCACCCGTGGTGAAGGCAC

Downstream 100 bases:

>100_bases
ATTCATGAACGAGGAAACCATTCCGATGACTTTTAGCCGTACACGCTTCAAACCCGCACGTCGACAAGGCGGTTTCACTT
TGCTGGAAATGCTTGCCGTT

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLRRALGSGLLNGAALVSFTQQLATLLGAGQP
LERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLR
GEVINALIYPAFLVVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIWGMAIRMR
DPQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCTNRALQAQVEQAAESVKGGGTLASA
FGAQPLLPDLALQMIEVGEQAGELDTMLMKVADVFDVEAKRGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTSNI

Sequences:

>Translated_400_residues
MSLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLRRALGSGLLNGAALVSFTQQLATLLGAGQP
LERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLR
GEVINALIYPAFLVVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIWGMAIRMR
DPQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCTNRALQAQVEQAAESVKGGGTLASA
FGAQPLLPDLALQMIEVGEQAGELDTMLMKVADVFDVEAKRGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTSNI
>Mature_399_residues
SLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLRRALGSGLLNGAALVSFTQQLATLLGAGQPL
ERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEEEGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRG
EVINALIYPAFLVVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIWGMAIRMRD
PQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCTNRALQAQVEQAAESVKGGGTLASAF
GAQPLLPDLALQMIEVGEQAGELDTMLMKVADVFDVEAKRGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTSNI

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=397, Percent_Identity=30.9823677581864, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI1786295, Length=395, Percent_Identity=26.8354430379747, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 42707; Mature: 42576

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLRRALGSGLLN
CCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
GAALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEE
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC
EGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVVGVLGS
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIWGMAIRMR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCTNRAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAQVEQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDTMLMKVADVFDVEAK
HHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTSNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLFKYRALDAQGAPQNGTLEARDQDAAIAALQKRGLMVLQVDAAGLGGLRRALGSGLLN
CCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
GAALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTKALIERIREQVKAGKPLSVALEE
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC
EGSQFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVVGVLGS
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLLAYVVPQFVPIFKDLGVPIPLITEVILNLGEFLSDYGLAVLAGLIALIWGMAIRMR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPQRRERRDRRLLGIRVIGPLLQRIEAARLTRTLGTLLTNGVALLQALVIARQVCTNRAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAQVEQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDTMLMKVADVFDVEAK
HHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGIDRMLAALVPALTVVMAGMVAVIMLAIMLPLMSLTSNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]