Click here to switch to the map view.

The map label for this gene is yfdC [H]

Identifier: 66046355

GI number: 66046355

Start: 3748593

End: 3749528

Strand: Direct

Name: yfdC [H]

Synonym: Psyr_3126

Alternate gene names: 66046355

Gene position: 3748593-3749528 (Clockwise)

Preceding gene: 66046354

Following gene: 66046356

Centisome position: 61.52

GC content: 57.26

Gene sequence:

>936_bases
ATGGACCACGAAGTAGATGGCAAGACCCCCGGCCTGTCAGCCGAGGAAGAGCGCGAGATCGATGAGAACCAGCCGCCCCG
CGCGGCGGTGTTGCACGAAACCATTCGCATGCAGGGCGACCACGAACTGGAGCGCAGCGTAGCCGCGCTGTGGTGGTCGG
CATTGGCTGCAGGACTGACCATGGGCCTGTCGCTGATGGCGATGGGTTTGCTGAACTCGCGCCTCGAAGGCATCCCCGGC
AGTCATGTGATCAGCAGCCTCGGCTATTCGGCAGGGTTTCTGGCGGTGATCCTGGCGCGTCAGCAACTGTTCACGGAAAA
CACCATCACAGCTGTGCTGCCGGTCATGAGCAAGCTGAACCTGGCCAACATCGGGCGGCTGCTGCGCTTGTGGGGTGTGG
TTCTGACCGGCAACCTGGTCGGCACGCTGACGGTGGCCTATGTCATGCTCAACCTGCCGATTTTCGATACCAGCACCGAC
AAGGCGTTTCTGGAAATTGGCCACAAGGTTATGGAAAACGACATGGCCCAGATGTTTTCCAAGGGGATCGTCTCGGGCTG
GATGATTGCGACCATGGTCTGGATGATCGCGTCGATGGAAAACGCCAAGATAGCGATCATTGTGCTGATCACCTACCTGA
TGGCGCTCGGCGACTTCACGCACATCGTGGTGGGTTCGGCCGAAGTATCCTATCTTGTATTCGCTGGTGAGCTGGGCTGG
AAGGATTTCTGGTTCGCTTTTGCAGGCCCCACCCTGGCAGGCAACATTATCGGTGGCAGTTTTATTTTCGCCTTGATCAG
CCATGCGCAGATCCGCAGTGAAAAAGACACCACAGAGAAAATGGAGCGCGACCGCAAAAACAAGGAAGAAAAACGTCGCC
TGGAGAAAGCGCAAAAGCTCAAGGAAGCGGATTCCACGGCAAAGCGAGAAATATGA

Upstream 100 bases:

>100_bases
GCCCCGCCGCTGGCGAACGACAGCGCGCGGCGCCTGTCTGAACCATCGGCCCGACATTGCCCCGGTCGGTCCATTTCATC
ACTGGCGCTGAGGACGTTGT

Downstream 100 bases:

>100_bases
TCCCTATCATTAAACTTTCTTTCAGGAAACGCGGCGGGTTTTAAAGGCAGAATGACTCTTTGAACGCATCTATTCAGGCA
GGGACCATGACCCGAATTCT

Product: transporter, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDHEVDGKTPGLSAEEEREIDENQPPRAAVLHETIRMQGDHELERSVAALWWSALAAGLTMGLSLMAMGLLNSRLEGIPG
SHVISSLGYSAGFLAVILARQQLFTENTITAVLPVMSKLNLANIGRLLRLWGVVLTGNLVGTLTVAYVMLNLPIFDTSTD
KAFLEIGHKVMENDMAQMFSKGIVSGWMIATMVWMIASMENAKIAIIVLITYLMALGDFTHIVVGSAEVSYLVFAGELGW
KDFWFAFAGPTLAGNIIGGSFIFALISHAQIRSEKDTTEKMERDRKNKEEKRRLEKAQKLKEADSTAKREI

Sequences:

>Translated_311_residues
MDHEVDGKTPGLSAEEEREIDENQPPRAAVLHETIRMQGDHELERSVAALWWSALAAGLTMGLSLMAMGLLNSRLEGIPG
SHVISSLGYSAGFLAVILARQQLFTENTITAVLPVMSKLNLANIGRLLRLWGVVLTGNLVGTLTVAYVMLNLPIFDTSTD
KAFLEIGHKVMENDMAQMFSKGIVSGWMIATMVWMIASMENAKIAIIVLITYLMALGDFTHIVVGSAEVSYLVFAGELGW
KDFWFAFAGPTLAGNIIGGSFIFALISHAQIRSEKDTTEKMERDRKNKEEKRRLEKAQKLKEADSTAKREI
>Mature_311_residues
MDHEVDGKTPGLSAEEEREIDENQPPRAAVLHETIRMQGDHELERSVAALWWSALAAGLTMGLSLMAMGLLNSRLEGIPG
SHVISSLGYSAGFLAVILARQQLFTENTITAVLPVMSKLNLANIGRLLRLWGVVLTGNLVGTLTVAYVMLNLPIFDTSTD
KAFLEIGHKVMENDMAQMFSKGIVSGWMIATMVWMIASMENAKIAIIVLITYLMALGDFTHIVVGSAEVSYLVFAGELGW
KDFWFAFAGPTLAGNIIGGSFIFALISHAQIRSEKDTTEKMERDRKNKEEKRRLEKAQKLKEADSTAKREI

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=285, Percent_Identity=54.3859649122807, Blast_Score=315, Evalue=3e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 34270; Mature: 34270

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHEVDGKTPGLSAEEEREIDENQPPRAAVLHETIRMQGDHELERSVAALWWSALAAGLT
CCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MGLSLMAMGLLNSRLEGIPGSHVISSLGYSAGFLAVILARQQLFTENTITAVLPVMSKLN
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LANIGRLLRLWGVVLTGNLVGTLTVAYVMLNLPIFDTSTDKAFLEIGHKVMENDMAQMFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KGIVSGWMIATMVWMIASMENAKIAIIVLITYLMALGDFTHIVVGSAEVSYLVFAGELGW
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCEEEEEEECCCCC
KDFWFAFAGPTLAGNIIGGSFIFALISHAQIRSEKDTTEKMERDRKNKEEKRRLEKAQKL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
KEADSTAKREI
HHHHHHHHCCC
>Mature Secondary Structure
MDHEVDGKTPGLSAEEEREIDENQPPRAAVLHETIRMQGDHELERSVAALWWSALAAGLT
CCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MGLSLMAMGLLNSRLEGIPGSHVISSLGYSAGFLAVILARQQLFTENTITAVLPVMSKLN
HHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LANIGRLLRLWGVVLTGNLVGTLTVAYVMLNLPIFDTSTDKAFLEIGHKVMENDMAQMFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KGIVSGWMIATMVWMIASMENAKIAIIVLITYLMALGDFTHIVVGSAEVSYLVFAGELGW
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCEEEEEEECCCCC
KDFWFAFAGPTLAGNIIGGSFIFALISHAQIRSEKDTTEKMERDRKNKEEKRRLEKAQKL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
KEADSTAKREI
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]