Click here to switch to the map view.

The map label for this gene is treZ [H]

Identifier: 66046224

GI number: 66046224

Start: 3585283

End: 3587097

Strand: Direct

Name: treZ [H]

Synonym: Psyr_2993

Alternate gene names: 66046224

Gene position: 3585283-3587097 (Clockwise)

Preceding gene: 66046223

Following gene: 66046225

Centisome position: 58.84

GC content: 59.94

Gene sequence:

>1815_bases
ATGCCACTGCGTACAGACGATAACTGGCGCCACGGCGCCGTTTTGTTGGACCCTGAACACACCCGGTTTGCCCTCTGGGC
ACCGGATACCTCATTCGTGAATGTCGAACTGCAGGATGGCCAGTCACTGGCCATGCTGCCGCAGTCCGACGGCTGGTTCG
TACTTGAGGCCCGCTGCAAGGCGGGTACCCGCTACCGCTTCAGGATCGACCACGAGCTGGACGTTCCTGATCCCGCCTCC
CGGGCACAGGTTGATGATGTTCACTCTGAAAGCCTCGTAGTCGACCCTCACGCTTATTCATGGCAGAACACTGCATGGAA
CGGTCGTCCATGGCATGAAGCAGTGATCTATGAGCTGCACGTGGGCGCCATGGGTGGCTACGCCGGGGTGGAAAAGCACC
TGCCGCGACTTGCCCGACTGGGCGTTACCGCGATCGAGCTGATGCCGCTTGCGCAGTTCCCCGGTGATCGCAACTGGGGC
TACGATGGCGTTCTGCATTATGCTCCGCAATCGTCCTATGGCACGCCTGAACAGCTCAAGCACCTGATCGACACCGCTCA
CGGTCTTGGCCTGATGGTTATCCTGGACGTGGTGTACAACCACTTCGGCCCGGACGGCAACTATCTGGGCAGTTATGCCA
AGGAGTTTTTCCGCAGCGACCTGCACACCCCGTGGGGCGATGCGATCGACTTCAGACGTCCGCAGGTGCGCGACTTTTTT
GTCGACAATGCCCTGATGTGGCTCCTTGAGTACCGCTTCGACGGCCTGCGCATGGACGCTGTTCACGCCATTCGCGACAA
GACCTTCCTGCCGGAGTTTGCGGAGCGGGTTCGTAGCCGCATTGAACCCGGCAGACACGTGTGGCTGAACCTGGAGAACG
AGTTCAACCAGGCCAGCCTTCTGGAAAAAGGTTTCGATGCACAGTGGGACGACGACGGGCACAACACCCTCCACGTGCTG
CTGACCGGTGAAACCGACGCCTACTATTCCGACTTCGCCAAAGAGCCGACGCAAAAACTTGCGCGCCTGCTCAGCGAGGG
GTTTGTCTATCAAGGCGAACCGACGCGCCACGGGCATACGCGAGGCGAGCCAAGTGCGCACCTGCCGCCGTCGGCTTTTG
TGTTGTTTCTGCAGAACCATGATCAGATCGGCAACCGCGCACTCGGTGAACGCTTGCCGCAACTCTGTGCGCCTGCTGCA
TTGAAAGCCGCCACCGCCCTGCTGCTGCTTTCACCGATGATTCCGCTGATGTTCATGGGCGATGAATGGGCGGCCAGCGA
GCCGTTTCTGTTCTTCACCAGCCACCACGGCGAACTGGCCGATGCGGTACGCGAGGGACGTCGCAAGGAGTTCGCTGATT
TCGCCGCGTTCGCCGACCCGGAAAAGCGCGAGCACATTCCTGATCCGAACGACATCAAGACGTTCGAAGCCTCACGCCCG
GCATTTTCCGCAGTCGATCTCGACACCGACATAGGTCAGGATCATCGCAGCTGGCTGCAGTTCTACACGCAGTTGCTGGC
TTTACGGCACCAGGAAATCATGCCACGCCTGCAGGGCGCACGCTTCCTGAGTACCGATATTCTCGGCGACAAGGCGGTCA
GCGCGCGCTGGACGCTGGGCGATGGCAGCGAACTGCGTATCGACCTCAATCTCAGCGAGCATGCGGTCGACGCGCCACCA
CAAACGGGTGCCCGCGAGATATTCTCCAGCGCCGAAAAATCGTCCGAACTTTCCCCACCCGGCACCCTCAATGCTTACAC
GGCCATTGTCAGCCTGAAAGCGAGTGATGTTCTGGAGGAACAGGATGAACAATGA

Upstream 100 bases:

>100_bases
AACTGGCATCAGGCAGTAGAGCCCTACGCAGATCTCTATCGCGACCTGTTGAAGAAAAACGTGAGCGTTTCCAGCAACTA
CTAGGTTAAGGATTTAATGG

Downstream 100 bases:

>100_bases
GCAACTGGAGAGGCTTGCGACCGAGGCAGGATTGTCGGTGCACTGGGTCGATGCCAACGCTCGGCCGCAGACCGTCAGCC
CTGATGTGCTGCGCAAGGTA

Product: Alpha amylase, catalytic region

Products: NA

Alternate protein names: MTHase; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase; Maltooligosyl trehalose trehalohydrolase [H]

Number of amino acids: Translated: 604; Mature: 603

Protein sequence:

>604_residues
MPLRTDDNWRHGAVLLDPEHTRFALWAPDTSFVNVELQDGQSLAMLPQSDGWFVLEARCKAGTRYRFRIDHELDVPDPAS
RAQVDDVHSESLVVDPHAYSWQNTAWNGRPWHEAVIYELHVGAMGGYAGVEKHLPRLARLGVTAIELMPLAQFPGDRNWG
YDGVLHYAPQSSYGTPEQLKHLIDTAHGLGLMVILDVVYNHFGPDGNYLGSYAKEFFRSDLHTPWGDAIDFRRPQVRDFF
VDNALMWLLEYRFDGLRMDAVHAIRDKTFLPEFAERVRSRIEPGRHVWLNLENEFNQASLLEKGFDAQWDDDGHNTLHVL
LTGETDAYYSDFAKEPTQKLARLLSEGFVYQGEPTRHGHTRGEPSAHLPPSAFVLFLQNHDQIGNRALGERLPQLCAPAA
LKAATALLLLSPMIPLMFMGDEWAASEPFLFFTSHHGELADAVREGRRKEFADFAAFADPEKREHIPDPNDIKTFEASRP
AFSAVDLDTDIGQDHRSWLQFYTQLLALRHQEIMPRLQGARFLSTDILGDKAVSARWTLGDGSELRIDLNLSEHAVDAPP
QTGAREIFSSAEKSSELSPPGTLNAYTAIVSLKASDVLEEQDEQ

Sequences:

>Translated_604_residues
MPLRTDDNWRHGAVLLDPEHTRFALWAPDTSFVNVELQDGQSLAMLPQSDGWFVLEARCKAGTRYRFRIDHELDVPDPAS
RAQVDDVHSESLVVDPHAYSWQNTAWNGRPWHEAVIYELHVGAMGGYAGVEKHLPRLARLGVTAIELMPLAQFPGDRNWG
YDGVLHYAPQSSYGTPEQLKHLIDTAHGLGLMVILDVVYNHFGPDGNYLGSYAKEFFRSDLHTPWGDAIDFRRPQVRDFF
VDNALMWLLEYRFDGLRMDAVHAIRDKTFLPEFAERVRSRIEPGRHVWLNLENEFNQASLLEKGFDAQWDDDGHNTLHVL
LTGETDAYYSDFAKEPTQKLARLLSEGFVYQGEPTRHGHTRGEPSAHLPPSAFVLFLQNHDQIGNRALGERLPQLCAPAA
LKAATALLLLSPMIPLMFMGDEWAASEPFLFFTSHHGELADAVREGRRKEFADFAAFADPEKREHIPDPNDIKTFEASRP
AFSAVDLDTDIGQDHRSWLQFYTQLLALRHQEIMPRLQGARFLSTDILGDKAVSARWTLGDGSELRIDLNLSEHAVDAPP
QTGAREIFSSAEKSSELSPPGTLNAYTAIVSLKASDVLEEQDEQ
>Mature_603_residues
PLRTDDNWRHGAVLLDPEHTRFALWAPDTSFVNVELQDGQSLAMLPQSDGWFVLEARCKAGTRYRFRIDHELDVPDPASR
AQVDDVHSESLVVDPHAYSWQNTAWNGRPWHEAVIYELHVGAMGGYAGVEKHLPRLARLGVTAIELMPLAQFPGDRNWGY
DGVLHYAPQSSYGTPEQLKHLIDTAHGLGLMVILDVVYNHFGPDGNYLGSYAKEFFRSDLHTPWGDAIDFRRPQVRDFFV
DNALMWLLEYRFDGLRMDAVHAIRDKTFLPEFAERVRSRIEPGRHVWLNLENEFNQASLLEKGFDAQWDDDGHNTLHVLL
TGETDAYYSDFAKEPTQKLARLLSEGFVYQGEPTRHGHTRGEPSAHLPPSAFVLFLQNHDQIGNRALGERLPQLCAPAAL
KAATALLLLSPMIPLMFMGDEWAASEPFLFFTSHHGELADAVREGRRKEFADFAAFADPEKREHIPDPNDIKTFEASRPA
FSAVDLDTDIGQDHRSWLQFYTQLLALRHQEIMPRLQGARFLSTDILGDKAVSARWTLGDGSELRIDLNLSEHAVDAPPQ
TGAREIFSSAEKSSELSPPGTLNAYTAIVSLKASDVLEEQDEQ

Specific function: Catalyzes The Formation Of The Alpha-1,6-Glucosidic Linkages In Glycogen By Scission Of A 1,4-Alpha-Linked Oligosaccharide From Growing Alpha-1,4-Glucan Chains And The Subsequent Attachment Of The Oligosaccharide To The Alpha-1,6 Position. Has A Preferenc

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=198, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=2e-17,
Organism=Escherichia coli, GI1789839, Length=273, Percent_Identity=28.2051282051282, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI2367229, Length=229, Percent_Identity=28.3842794759825, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17554896, Length=169, Percent_Identity=31.3609467455621, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32564391, Length=169, Percent_Identity=31.3609467455621, Blast_Score=84, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320826, Length=166, Percent_Identity=34.3373493975904, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28573410, Length=164, Percent_Identity=34.7560975609756, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- InterPro:   IPR022567
- InterPro:   IPR012768 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02922 CBM_48; PF11941 DUF3459 [H]

EC number: =3.2.1.141 [H]

Molecular weight: Translated: 68121; Mature: 67990

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRTDDNWRHGAVLLDPEHTRFALWAPDTSFVNVELQDGQSLAMLPQSDGWFVLEARCK
CCCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECC
AGTRYRFRIDHELDVPDPASRAQVDDVHSESLVVDPHAYSWQNTAWNGRPWHEAVIYELH
CCCEEEEEECCCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCCCCCCHHHEEEEEEE
VGAMGGYAGVEKHLPRLARLGVTAIELMPLAQFPGDRNWGYDGVLHYAPQSSYGTPEQLK
ECCCCCHHHHHHHHHHHHHHCCHHHHEEEHHHCCCCCCCCCCCEEEECCCCCCCCHHHHH
HLIDTAHGLGLMVILDVVYNHFGPDGNYLGSYAKEFFRSDLHTPWGDAIDFRRPQVRDFF
HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
VDNALMWLLEYRFDGLRMDAVHAIRDKTFLPEFAERVRSRIEPGRHVWLNLENEFNQASL
HHHHHHHHHHHHCCCEEHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
LEKGFDAQWDDDGHNTLHVLLTGETDAYYSDFAKEPTQKLARLLSEGFVYQGEPTRHGHT
HHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHCCCEECCCCCCCCCC
RGEPSAHLPPSAFVLFLQNHDQIGNRALGERLPQLCAPAALKAATALLLLSPMIPLMFMG
CCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
DEWAASEPFLFFTSHHGELADAVREGRRKEFADFAAFADPEKREHIPDPNDIKTFEASRP
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCC
AFSAVDLDTDIGQDHRSWLQFYTQLLALRHQEIMPRLQGARFLSTDILGDKAVSARWTLG
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCEEEEEEC
DGSELRIDLNLSEHAVDAPPQTGAREIFSSAEKSSELSPPGTLNAYTAIVSLKASDVLEE
CCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEHEEEEHHHHHHHH
QDEQ
CCCC
>Mature Secondary Structure 
PLRTDDNWRHGAVLLDPEHTRFALWAPDTSFVNVELQDGQSLAMLPQSDGWFVLEARCK
CCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECC
AGTRYRFRIDHELDVPDPASRAQVDDVHSESLVVDPHAYSWQNTAWNGRPWHEAVIYELH
CCCEEEEEECCCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCCCCCCHHHEEEEEEE
VGAMGGYAGVEKHLPRLARLGVTAIELMPLAQFPGDRNWGYDGVLHYAPQSSYGTPEQLK
ECCCCCHHHHHHHHHHHHHHCCHHHHEEEHHHCCCCCCCCCCCEEEECCCCCCCCHHHHH
HLIDTAHGLGLMVILDVVYNHFGPDGNYLGSYAKEFFRSDLHTPWGDAIDFRRPQVRDFF
HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
VDNALMWLLEYRFDGLRMDAVHAIRDKTFLPEFAERVRSRIEPGRHVWLNLENEFNQASL
HHHHHHHHHHHHCCCEEHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
LEKGFDAQWDDDGHNTLHVLLTGETDAYYSDFAKEPTQKLARLLSEGFVYQGEPTRHGHT
HHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHCCCEECCCCCCCCCC
RGEPSAHLPPSAFVLFLQNHDQIGNRALGERLPQLCAPAALKAATALLLLSPMIPLMFMG
CCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
DEWAASEPFLFFTSHHGELADAVREGRRKEFADFAAFADPEKREHIPDPNDIKTFEASRP
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCC
AFSAVDLDTDIGQDHRSWLQFYTQLLALRHQEIMPRLQGARFLSTDILGDKAVSARWTLG
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCEEEEEEC
DGSELRIDLNLSEHAVDAPPQTGAREIFSSAEKSSELSPPGTLNAYTAIVSLKASDVLEE
CCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEHEEEEHHHHHHHH
QDEQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]