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The map label for this gene is yodC [H]

Identifier: 66046179

GI number: 66046179

Start: 3537212

End: 3537856

Strand: Direct

Name: yodC [H]

Synonym: Psyr_2948

Alternate gene names: 66046179

Gene position: 3537212-3537856 (Clockwise)

Preceding gene: 66046178

Following gene: 66046180

Centisome position: 58.05

GC content: 53.33

Gene sequence:

>645_bases
TTGTTTCCCCCTTACGGCACAGAGAGCACCATGTCTATTATCGCTGACCTCATCAAGTCCCGAATTTCCGCCAACAACTA
CGACACTGAGCGCAAACTCTCAGATCAAGCGATCACTGATCTGATTGATCTGGCCACCCATGCGCCGTCCGCCTTCAACC
TTCAAAACTGGCGTTTCGTAGCCATACGCAGTGAAGAAGCAAAAGCACGTTTGCTGCCCTTGGCCTATGGACAAAAGAAG
GTGGTGGATTCAGCCGTGACATTTATTGTGTGTGGCACCCTGAATCCGCATCAAACGATTGCAACGTCGCTGAAGCCTTC
GATGGATGCCGGGGTCATCGACAAGGCCATTTATGACATGTGGGTGGGCGCCGTTCAGGGTATGTACGCTGAAAATCCAC
AACTGCAGCGCGATGAAGCCATCCGTTCAGGCTCGCTGGCCGCCATGACGCTGATGCTTGCAGCTAAAGGCCAAGGCCTT
GATTCAACCCCCATGATCGGCTTTGACCCAGCGGCGGTTGCAGAAGCATTCAATCTTTCAGCTACTGAAATCCCCGTGAT
GCTGGTGACCGTCGGTTATCCAGGCGAGAGCAACTGGCCGCAAAAGCCGCGTAAAGCCGTTCGCGAAGTGCTTGAGTTTA
TCTAG

Upstream 100 bases:

>100_bases
CTGGATCCGTTCGGTGCTGTGTACATGACGCCGTTCGACGGCTTCAGCCGCTAACCGATTTGATCTGCGCAGACTCGACT
GCAAAAAACCGGGGCTGCAC

Downstream 100 bases:

>100_bases
CACACAAAGTGCGAACGACGCATCGCTTAAGCAACCCTGTCAAACCCGACATCACGACGACCAGATCACTCTGAAGGAGC
GTCCCATGGCCAACCCGACC

Product: nitroreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MFPPYGTESTMSIIADLIKSRISANNYDTERKLSDQAITDLIDLATHAPSAFNLQNWRFVAIRSEEAKARLLPLAYGQKK
VVDSAVTFIVCGTLNPHQTIATSLKPSMDAGVIDKAIYDMWVGAVQGMYAENPQLQRDEAIRSGSLAAMTLMLAAKGQGL
DSTPMIGFDPAAVAEAFNLSATEIPVMLVTVGYPGESNWPQKPRKAVREVLEFI

Sequences:

>Translated_214_residues
MFPPYGTESTMSIIADLIKSRISANNYDTERKLSDQAITDLIDLATHAPSAFNLQNWRFVAIRSEEAKARLLPLAYGQKK
VVDSAVTFIVCGTLNPHQTIATSLKPSMDAGVIDKAIYDMWVGAVQGMYAENPQLQRDEAIRSGSLAAMTLMLAAKGQGL
DSTPMIGFDPAAVAEAFNLSATEIPVMLVTVGYPGESNWPQKPRKAVREVLEFI
>Mature_214_residues
MFPPYGTESTMSIIADLIKSRISANNYDTERKLSDQAITDLIDLATHAPSAFNLQNWRFVAIRSEEAKARLLPLAYGQKK
VVDSAVTFIVCGTLNPHQTIATSLKPSMDAGVIDKAIYDMWVGAVQGMYAENPQLQRDEAIRSGSLAAMTLMLAAKGQGL
DSTPMIGFDPAAVAEAFNLSATEIPVMLVTVGYPGESNWPQKPRKAVREVLEFI

Specific function: Putative nitroreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787243, Length=188, Percent_Identity=27.1276595744681, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23308; Mature: 23308

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPPYGTESTMSIIADLIKSRISANNYDTERKLSDQAITDLIDLATHAPSAFNLQNWRFV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
AIRSEEAKARLLPLAYGQKKVVDSAVTFIVCGTLNPHQTIATSLKPSMDAGVIDKAIYDM
EEECCCCCCEECCHHCCHHHHHHHHEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHH
WVGAVQGMYAENPQLQRDEAIRSGSLAAMTLMLAAKGQGLDSTPMIGFDPAAVAEAFNLS
HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
ATEIPVMLVTVGYPGESNWPQKPRKAVREVLEFI
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC
>Mature Secondary Structure
MFPPYGTESTMSIIADLIKSRISANNYDTERKLSDQAITDLIDLATHAPSAFNLQNWRFV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
AIRSEEAKARLLPLAYGQKKVVDSAVTFIVCGTLNPHQTIATSLKPSMDAGVIDKAIYDM
EEECCCCCCEECCHHCCHHHHHHHHEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHH
WVGAVQGMYAENPQLQRDEAIRSGSLAAMTLMLAAKGQGLDSTPMIGFDPAAVAEAFNLS
HHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCC
ATEIPVMLVTVGYPGESNWPQKPRKAVREVLEFI
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]