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The map label for this gene is yhjC [H]

Identifier: 66046176

GI number: 66046176

Start: 3535483

End: 3536385

Strand: Reverse

Name: yhjC [H]

Synonym: Psyr_2945

Alternate gene names: 66046176

Gene position: 3536385-3535483 (Counterclockwise)

Preceding gene: 66046182

Following gene: 66046175

Centisome position: 58.03

GC content: 58.14

Gene sequence:

>903_bases
ATGATTCCCATAGACTCGTTCCAAGGCGTCATCACCTTTGTGGTGGCAGCGCGTTCGAATAGCTTTACCGAGGCAGCCGG
GCGACTGGGTATTTCGAAATCGGCCGTCGGCAAATCCATAGCCCGGCTTGAAGCGCGACTGGGCGTCCAGCTGTTTCATC
GCTCTACCCGTCGAATATCTCTGACTGCTGATGGCGATGCCTATTTCATCGCCTGCTCGAACGCGCTCGAAGAAATAGGT
GCGGCTGAAAGCGGATTGGCTCCGGGAACCCGCGAACCGTCCGGACGATTGCGCATCGATATACCCGTGGCATTCGGGCG
CCGGGTTGTCGCCCCGTTGTTATTTGAAATCGCTAACAAGTATCCCGCGCTGCAGTTGAATATGACTTTTTCTGACCACT
TGGTCGATCCGATTGAAGAGGGGATCGACCTGCTGGTTCGTTTTGGAGAACTCAAGGATACCAGCGGCCTTGTTGCTCGC
CGGCTTGCGCGACAACGCTGGGCTATTTGCGCCGCGCCGAGTTATCTGGCCCGTTTTGGCGTACCTGACACCCTGGAAGA
TCTGAATCGTCACCATTGCATCGTCGGCCATCGACGGGGCCAACCACTCTCCTGGCGAGTCAATGAAGATCAGGAAACGG
TTCGCTACGCGCCACCTTCCGCACATCAGATCGGCGATGGCGAGGCCATGATCCTGGCAGCCGTCGCCGGCGTCGGCCTG
TGCCAGATGCCGCGCTGCCTGTTCAAGGACGACATTGACGCGGGCCGACTGGTTGAGGTGCTGGCAGGCTATGAACCAGA
GCCCGTTGAAGTACATGCCGTATGGCCCAGGGTTTCTCACTTGCGGCCCAAGGTGAGGTATGTGGTTGATGAGCTGGTGC
GGTTGTGTGAGCACTGGCAGTAG

Upstream 100 bases:

>100_bases
CAGCCAGAGACATACCTCCATGCTAGGGTAGAAGTGTCTGGCGATAAACTGCCTGAAACTCTAAAGTGGGTAGAGTTATT
GTCTACTTTTCAGGGCGGTT

Downstream 100 bases:

>100_bases
CGTCTTCGCGAAGACATTCCAGCCAGGCAGACGCCCTGCATCACCTCGGGCCAATCCGGTTTTGCAGAACCCGCTACCGC
CAATTCATGGAGCCCCACAC

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MIPIDSFQGVITFVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRISLTADGDAYFIACSNALEEIG
AAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANKYPALQLNMTFSDHLVDPIEEGIDLLVRFGELKDTSGLVAR
RLARQRWAICAAPSYLARFGVPDTLEDLNRHHCIVGHRRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGL
CQMPRCLFKDDIDAGRLVEVLAGYEPEPVEVHAVWPRVSHLRPKVRYVVDELVRLCEHWQ

Sequences:

>Translated_300_residues
MIPIDSFQGVITFVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRISLTADGDAYFIACSNALEEIG
AAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANKYPALQLNMTFSDHLVDPIEEGIDLLVRFGELKDTSGLVAR
RLARQRWAICAAPSYLARFGVPDTLEDLNRHHCIVGHRRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGL
CQMPRCLFKDDIDAGRLVEVLAGYEPEPVEVHAVWPRVSHLRPKVRYVVDELVRLCEHWQ
>Mature_300_residues
MIPIDSFQGVITFVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRISLTADGDAYFIACSNALEEIG
AAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANKYPALQLNMTFSDHLVDPIEEGIDLLVRFGELKDTSGLVAR
RLARQRWAICAAPSYLARFGVPDTLEDLNRHHCIVGHRRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGL
CQMPRCLFKDDIDAGRLVEVLAGYEPEPVEVHAVWPRVSHLRPKVRYVVDELVRLCEHWQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=30.2013422818792, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=32.0819112627986, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=30, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=33.9041095890411, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787128, Length=280, Percent_Identity=28.9285714285714, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=28.125, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=27.0175438596491, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788706, Length=254, Percent_Identity=27.5590551181102, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=249, Percent_Identity=27.3092369477912, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=273, Percent_Identity=27.1062271062271, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=35.3448275862069, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=26.3888888888889, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790011, Length=295, Percent_Identity=23.728813559322, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786508, Length=190, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33106; Mature: 33106

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPIDSFQGVITFVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRIS
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTADGDAYFIACSNALEEIGAAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANK
EEECCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
YPALQLNMTFSDHLVDPIEEGIDLLVRFGELKDTSGLVARRLARQRWAICAAPSYLARFG
CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCC
VPDTLEDLNRHHCIVGHRRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGL
CCHHHHHCCCCEEEEECCCCCCEEEEECCCCHHEEECCCCCCCCCCCCHHHHHHHHHCCH
CQMPRCLFKDDIDAGRLVEVLAGYEPEPVEVHAVWPRVSHLRPKVRYVVDELVRLCEHWQ
HHCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIPIDSFQGVITFVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRIS
CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTADGDAYFIACSNALEEIGAAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANK
EEECCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCC
YPALQLNMTFSDHLVDPIEEGIDLLVRFGELKDTSGLVARRLARQRWAICAAPSYLARFG
CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCC
VPDTLEDLNRHHCIVGHRRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVGL
CCHHHHHCCCCEEEEECCCCCCEEEEECCCCHHEEECCCCCCCCCCCCHHHHHHHHHCCH
CQMPRCLFKDDIDAGRLVEVLAGYEPEPVEVHAVWPRVSHLRPKVRYVVDELVRLCEHWQ
HHCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]