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The map label for this gene is cph2 [H]

Identifier: 66046170

GI number: 66046170

Start: 3526710

End: 3527666

Strand: Reverse

Name: cph2 [H]

Synonym: Psyr_2939

Alternate gene names: 66046170

Gene position: 3527666-3526710 (Counterclockwise)

Preceding gene: 66046171

Following gene: 66046168

Centisome position: 57.89

GC content: 59.14

Gene sequence:

>957_bases
ATGCAACCTGTACCTAGCCTGCTGATTGTCGATGATGATATTTCCGCCATTCGCGTATTGAGCAAAATTCTGAACGGTCT
GGGGCAGATTCGTTTTGCCACGGGCGGTGCCCAGGCCTTGAAGATGGTCCGGGAAATGCGTCCTGACCTTATCCTTCTCG
ACGCGGAGATGCCCGGAATGAGCGGTTTTGAAGTCTGCGAGACGCTCAAGGCTGATCAATTGCTGGAAGACGTTCCCGTC
ATCTTCATCACCAGCCACACCGAAACCCGTATCGAGGAAGCCGGACTGGCGCTGGGGGCGGTGGATTTCATCGGCAAGCC
TATTCAGCCTTTGATCGTCACGGCGCGAGTAAAGACCCACCTGCGCCTGAAAATGGCGATGGACCAGCTCAACCTGCTGG
CCCAGACCGATGGGCTGACGGGGCTGGCCAATCGGCGTTTCCTCGACGAGAGTATCGCGCGCGAATGGCTGCGCATGCGG
CGCAACCAAGGTGCGTTTTCGCTGCTGTTGCTCGACATCGATTTCTTCAAACGTTACAACGATCACTATGGCCATTTGCA
AGGCGATGAGTGCCTGATTGCCATCGCCCACGCTTTGAAAAAGTGCGTGCACAGGTCGACCGATCTGGTGGCTCGTTATG
GGGGCGAGGAGTTTGCCGTGCTGTTGCCGGATACCGGGGCAGAGGGCGCCTGTCGTCTGGCGGATGAAATCGTGCAGCAC
ATTCAAGGCCTCAACAAGCCCCATGAAACCAGTGACTTCGGCCGGGTGACCGTGTCGGTGGGGGTAGCAAGTCTGGAGGC
TGGTGCGCTGCCCGTCCCGAGCCCGGGCGCTGCAATCGGCCTTGCGCCTGACTCGATCGCCATAGCGTTGCTGGCGGAAG
CCGACCGGGCCTTGTACCGGGCCAAGCATGAGGGGCGAAACTGCAGCCGGTTTGAGCCGATACAGGTTGCGCCTTGA

Upstream 100 bases:

>100_bases
ACTGGTCGAACAGCTCTGGCAGACCATTGAAGGGCTGGAGTTCGAGCAGGCACTGCACCTGCTCGAACGTGCGGAATTAT
AAAAAGGAGCGTCACCCACC

Downstream 100 bases:

>100_bases
GTCTGCGGTCCATGTTTTAAAATCACAGCGTCAGCGAAGCGTCAGGGACACTGACACCTTGCTTCAAACCGCATTCTTGT
TGAGCTCTGCTTCAAGACGG

Product: GGDEF

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MQPVPSLLIVDDDISAIRVLSKILNGLGQIRFATGGAQALKMVREMRPDLILLDAEMPGMSGFEVCETLKADQLLEDVPV
IFITSHTETRIEEAGLALGAVDFIGKPIQPLIVTARVKTHLRLKMAMDQLNLLAQTDGLTGLANRRFLDESIAREWLRMR
RNQGAFSLLLLDIDFFKRYNDHYGHLQGDECLIAIAHALKKCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLADEIVQH
IQGLNKPHETSDFGRVTVSVGVASLEAGALPVPSPGAAIGLAPDSIAIALLAEADRALYRAKHEGRNCSRFEPIQVAP

Sequences:

>Translated_318_residues
MQPVPSLLIVDDDISAIRVLSKILNGLGQIRFATGGAQALKMVREMRPDLILLDAEMPGMSGFEVCETLKADQLLEDVPV
IFITSHTETRIEEAGLALGAVDFIGKPIQPLIVTARVKTHLRLKMAMDQLNLLAQTDGLTGLANRRFLDESIAREWLRMR
RNQGAFSLLLLDIDFFKRYNDHYGHLQGDECLIAIAHALKKCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLADEIVQH
IQGLNKPHETSDFGRVTVSVGVASLEAGALPVPSPGAAIGLAPDSIAIALLAEADRALYRAKHEGRNCSRFEPIQVAP
>Mature_318_residues
MQPVPSLLIVDDDISAIRVLSKILNGLGQIRFATGGAQALKMVREMRPDLILLDAEMPGMSGFEVCETLKADQLLEDVPV
IFITSHTETRIEEAGLALGAVDFIGKPIQPLIVTARVKTHLRLKMAMDQLNLLAQTDGLTGLANRRFLDESIAREWLRMR
RNQGAFSLLLLDIDFFKRYNDHYGHLQGDECLIAIAHALKKCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLADEIVQH
IQGLNKPHETSDFGRVTVSVGVASLEAGALPVPSPGAAIGLAPDSIAIALLAEADRALYRAKHEGRNCSRFEPIQVAP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=39.4444444444444, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=201, Percent_Identity=32.8358208955224, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787802, Length=202, Percent_Identity=34.1584158415842, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=35.0877192982456, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=182, Percent_Identity=36.8131868131868, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=32.3863636363636, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=33.5051546391753, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=30.2702702702703, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788394, Length=120, Percent_Identity=36.6666666666667, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=31.8435754189944, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=134, Percent_Identity=29.1044776119403, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=33.5195530726257, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786599, Length=118, Percent_Identity=33.8983050847458, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790437, Length=103, Percent_Identity=36.8932038834951, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790860, Length=87, Percent_Identity=41.3793103448276, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=28.8135593220339, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1789149, Length=105, Percent_Identity=30.4761904761905, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 34658; Mature: 34658

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPVPSLLIVDDDISAIRVLSKILNGLGQIRFATGGAQALKMVREMRPDLILLDAEMPGM
CCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCC
SGFEVCETLKADQLLEDVPVIFITSHTETRIEEAGLALGAVDFIGKPIQPLIVTARVKTH
CHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCEEHHHHCCCCCCHHEEEEHHHHH
LRLKMAMDQLNLLAQTDGLTGLANRRFLDESIAREWLRMRRNQGAFSLLLLDIDFFKRYN
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHC
DHYGHLQGDECLIAIAHALKKCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLADEIVQH
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHH
IQGLNKPHETSDFGRVTVSVGVASLEAGALPVPSPGAAIGLAPDSIAIALLAEADRALYR
HHCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
AKHEGRNCSRFEPIQVAP
HHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQPVPSLLIVDDDISAIRVLSKILNGLGQIRFATGGAQALKMVREMRPDLILLDAEMPGM
CCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCC
SGFEVCETLKADQLLEDVPVIFITSHTETRIEEAGLALGAVDFIGKPIQPLIVTARVKTH
CHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCEEHHHHCCCCCCHHEEEEHHHHH
LRLKMAMDQLNLLAQTDGLTGLANRRFLDESIAREWLRMRRNQGAFSLLLLDIDFFKRYN
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHC
DHYGHLQGDECLIAIAHALKKCVHRSTDLVARYGGEEFAVLLPDTGAEGACRLADEIVQH
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHH
IQGLNKPHETSDFGRVTVSVGVASLEAGALPVPSPGAAIGLAPDSIAIALLAEADRALYR
HHCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
AKHEGRNCSRFEPIQVAP
HHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]