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The map label for this gene is yafC [H]

Identifier: 66046169

GI number: 66046169

Start: 3525762

End: 3526646

Strand: Direct

Name: yafC [H]

Synonym: Psyr_2938

Alternate gene names: 66046169

Gene position: 3525762-3526646 (Clockwise)

Preceding gene: 66046167

Following gene: 66046177

Centisome position: 57.86

GC content: 61.81

Gene sequence:

>885_bases
ATGCAAATATCTGATATAGAGGTGTTCGCCGCCATTGCTTCCAGCAGGAGTCTGTCGGAAGCGGCGCGTCGACTCGGGTT
GTCGCCGATGGCCATCTCCAGGCGTCTGGCTGCGCTGGAAAACGACCTGGGCGTCAGGCTGGTGCACCGCACAACCCGCT
CGGCATCACTGACGCCGGAGGGCGAAGTGTTTCTGCCGCACGCCAAAACCATGCTGCACGCCAGCGAAACCGCCCGCGCG
ACGCTGAAAGCCGATGCCGGTACAGCCAGTGGCGTACTGCGAGTCACAGCACCCAGCGTGTTTGGTCAGACCGTCATCAT
GCCGCTGCTGCCAGCCTTGATGCAGGACAATCCGGCACTGAGCATCGACCTGACGCTGTCGGACAGCATCGTGGACATTG
CCGGGCTGGGCATCGATGTCGCCATCCGAATCGCTACGATACGTGACTCTGCTCTGGTGGCCAGATCGCTGGCGCCCAAC
CCTCGGGTCGTGTGTGCAAGCCCCGACTACCTGGCGCGGCGCGGCCAGCCATCGTTGCTGGACGAACTCCGTCAACACCC
GTGCATCACCTTGCATGCGATGCCTTACTGGCCGTTCATCAGAGAGGGAGAACCGGTGGCCATCCGCGCTCAGGGGGCAT
TCTCGGCCAACAGCGTCGAAGCGGTGCGCACGGCGTGCAAACAGGGCCTGGGGCTGGCCATGCTGACTTATTGGGACGTT
CAGCAGGAAATCCGTGAAGGCAGTCTTCAACAGATACACTTCGAGGATGTCATCCCCGAGCAGCTGTCGGTGACGGCCGT
ATTGCCAACCCGCCAGCGCGTACCTCACCGGGTACGCCTGTTCGTTGACCGTCTTGAAGCAGAGCTCAACAAGAATGCGG
TTTGA

Upstream 100 bases:

>100_bases
CGCAGTCATTGACAGAACCTGCAGTAACGGTAAGGGCTGGCGCAGCCCATTGGAACCCGGCCGTGCAGATAAGGCGCTTT
AACGAAAATGGATAGAATCC

Downstream 100 bases:

>100_bases
AGCAAGGTGTCAGTGTCCCTGACGCTTCGCTGACGCTGTGATTTTAAAACATGGACCGCAGACTCAAGGCGCAACCTGTA
TCGGCTCAAACCGGCTGCAG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPEGEVFLPHAKTMLHASETARA
TLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPALSIDLTLSDSIVDIAGLGIDVAIRIATIRDSALVARSLAPN
PRVVCASPDYLARRGQPSLLDELRQHPCITLHAMPYWPFIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDV
QQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAELNKNAV

Sequences:

>Translated_294_residues
MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPEGEVFLPHAKTMLHASETARA
TLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPALSIDLTLSDSIVDIAGLGIDVAIRIATIRDSALVARSLAPN
PRVVCASPDYLARRGQPSLLDELRQHPCITLHAMPYWPFIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDV
QQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAELNKNAV
>Mature_294_residues
MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPEGEVFLPHAKTMLHASETARA
TLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPALSIDLTLSDSIVDIAGLGIDVAIRIATIRDSALVARSLAPN
PRVVCASPDYLARRGQPSLLDELRQHPCITLHAMPYWPFIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDV
QQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAELNKNAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=32.9824561403509, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=34.1379310344828, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=29.6928327645051, Blast_Score=141, Evalue=4e-35,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=31.0344827586207, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=29.553264604811, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1789440, Length=255, Percent_Identity=29.8039215686275, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=29.553264604811, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1790011, Length=308, Percent_Identity=25.6493506493506, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=27.5167785234899, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788481, Length=263, Percent_Identity=24.3346007604563, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788706, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31944; Mature: 31944

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPE
CCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
GEVFLPHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPAL
CCEECCCHHHHHHHHHHHHEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE
SIDLTLSDSIVDIAGLGIDVAIRIATIRDSALVARSLAPNPRVVCASPDYLARRGQPSLL
EEEEEECCCCHHHHCCCEEEEEEEEEECCHHHHHHHCCCCCEEEECCCHHHHHCCCCHHH
DELRQHPCITLHAMPYWPFIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDV
HHHHHCCCEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEHHHHHH
QQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAELNKNAV
HHHHHCCCCEEEEHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQISDIEVFAAIASSRSLSEAARRLGLSPMAISRRLAALENDLGVRLVHRTTRSASLTPE
CCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
GEVFLPHAKTMLHASETARATLKADAGTASGVLRVTAPSVFGQTVIMPLLPALMQDNPAL
CCEECCCHHHHHHHHHHHHEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE
SIDLTLSDSIVDIAGLGIDVAIRIATIRDSALVARSLAPNPRVVCASPDYLARRGQPSLL
EEEEEECCCCHHHHCCCEEEEEEEEEECCHHHHHHHCCCCCEEEECCCHHHHHCCCCHHH
DELRQHPCITLHAMPYWPFIREGEPVAIRAQGAFSANSVEAVRTACKQGLGLAMLTYWDV
HHHHHCCCEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEHHHHHH
QQEIREGSLQQIHFEDVIPEQLSVTAVLPTRQRVPHRVRLFVDRLEAELNKNAV
HHHHHCCCCEEEEHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]