| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is nemA [C]
Identifier: 66046168
GI number: 66046168
Start: 3524525
End: 3525622
Strand: Reverse
Name: nemA [C]
Synonym: Psyr_2937
Alternate gene names: 66046168
Gene position: 3525622-3524525 (Counterclockwise)
Preceding gene: 66046170
Following gene: 66046163
Centisome position: 57.86
GC content: 62.39
Gene sequence:
>1098_bases ATGAGCGAGACACACAAACACGTTACAGCCCCGTTCGACAGAGGTCATCTGAAACTGAAGAACAGGTTTGCGGTGGCGCC CATGACACGCGTGAGCGCGGACGAGCAGGGCAGTGCAACGCAGGCCATGACGCGCTATTACGAGCGGTTCGCCAAGGGCG GTTTTGGCCTGATCATCACCGAGGGCAACTACACCGATCGCCGTTTTTCCCAGGGCTACCGCTTCCAGCCCGGGCTCACT GATGACGAGCAGGCGCAGGCATGGCGTGCCACGACCGATGCTGTGCACCGGCATGGCAGTGTCATGATTGCGCAGCTCAT GCACGCCGGCGCACTCAGCCAGGCCAATCGCTTCGTCAGCGAGTCGGCGGGCCCTTCGGCCATTCGTCCCAAGGGCGAAC AGATGGCGTTCTATTACGGCGTGGGCAGCTACCGGGTTCCGCGAGCGATGAGTGACAAGGATATTGCCGAGGCCATTGAC GGGTTCGCCCGCGCGGCGCAACTGGCTATCGGCACTGCAGGCTTTGACGGTGTCGAGATACATGGTGCGAACGGCTACCT GCTGGATCAGTTTCTGACCGACTACAGCAATCAGCGCACCGATCAGTGGGGCGGTGAGGTCGGACAGCGCCTGCGACTGA CGCTCGAGGTCATCGCCGCAGTGAAAAAGGTCGCCGGGCAGGCACCGGTGGGCGTGCGTCTTTCACAAGGCAAGGTCAAC GACTTTCAGCACAAATGGGCCGGGGGCGAGGGCGATGCCGAAGTCATTTTCGCTGCGCTGGCCGATGCCGGGGTCGATTA CATCCATGTGACCGAACACGAAGCATGGCAGCCGGCCTTTACCCAGGGTCAAGCCAGCCTGGTCGAACTGGCCCGTCGCT ACGCGCCGGATGTTGCGCTGATCGCCAATGGCGGCCTGCACGATCCGCAAAAAGCCGACCAGGTGCTTCGCCAGGGTGCG GACATCATCGCAGTGGGCAAGGGTGCGCTGGCCAATCCGGACCTGCCAGAGTTGTTGCGTCAGGGCGCGCCACTGCGCGA CTTCGATCCAGCCATTCTCGGGCCGATTGCCAACATCAAGGACAGTGAGCTGGTCTAG
Upstream 100 bases:
>100_bases GCCGGGTTCCAATGGGCTGCGCCAGCCCTTACCGTTACTGCAGGTTCTGTCAATGACTGCGGGCAATCCGCAGCCGGTCT GCACAGTGAGGATTTGAAGC
Downstream 100 bases:
>100_bases TCGTTTGTGACGAACATCAGCGCTGGCTGAGCGTGCGCAATGCCTCGTTGATAGGTGTTGCGCCCTTAGTCAGTTCGATG ATCTGGCGGGATATCCCGGG
Product: NADH:flavin oxidoreductase/NADH oxidase
Products: NADP; Cytotoxic compound [C]
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MSETHKHVTAPFDRGHLKLKNRFAVAPMTRVSADEQGSATQAMTRYYERFAKGGFGLIITEGNYTDRRFSQGYRFQPGLT DDEQAQAWRATTDAVHRHGSVMIAQLMHAGALSQANRFVSESAGPSAIRPKGEQMAFYYGVGSYRVPRAMSDKDIAEAID GFARAAQLAIGTAGFDGVEIHGANGYLLDQFLTDYSNQRTDQWGGEVGQRLRLTLEVIAAVKKVAGQAPVGVRLSQGKVN DFQHKWAGGEGDAEVIFAALADAGVDYIHVTEHEAWQPAFTQGQASLVELARRYAPDVALIANGGLHDPQKADQVLRQGA DIIAVGKGALANPDLPELLRQGAPLRDFDPAILGPIANIKDSELV
Sequences:
>Translated_365_residues MSETHKHVTAPFDRGHLKLKNRFAVAPMTRVSADEQGSATQAMTRYYERFAKGGFGLIITEGNYTDRRFSQGYRFQPGLT DDEQAQAWRATTDAVHRHGSVMIAQLMHAGALSQANRFVSESAGPSAIRPKGEQMAFYYGVGSYRVPRAMSDKDIAEAID GFARAAQLAIGTAGFDGVEIHGANGYLLDQFLTDYSNQRTDQWGGEVGQRLRLTLEVIAAVKKVAGQAPVGVRLSQGKVN DFQHKWAGGEGDAEVIFAALADAGVDYIHVTEHEAWQPAFTQGQASLVELARRYAPDVALIANGGLHDPQKADQVLRQGA DIIAVGKGALANPDLPELLRQGAPLRDFDPAILGPIANIKDSELV >Mature_364_residues SETHKHVTAPFDRGHLKLKNRFAVAPMTRVSADEQGSATQAMTRYYERFAKGGFGLIITEGNYTDRRFSQGYRFQPGLTD DEQAQAWRATTDAVHRHGSVMIAQLMHAGALSQANRFVSESAGPSAIRPKGEQMAFYYGVGSYRVPRAMSDKDIAEAIDG FARAAQLAIGTAGFDGVEIHGANGYLLDQFLTDYSNQRTDQWGGEVGQRLRLTLEVIAAVKKVAGQAPVGVRLSQGKVND FQHKWAGGEGDAEVIFAALADAGVDYIHVTEHEAWQPAFTQGQASLVELARRYAPDVALIANGGLHDPQKADQVLRQGAD IIAVGKGALANPDLPELLRQGAPLRDFDPAILGPIANIKDSELV
Specific function: Reduces a range of alternative electron acceptors [H]
COG id: COG1902
COG function: function code C; NADH:flavin oxidoreductases, Old Yellow Enzyme family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family [H]
Homologues:
Organism=Escherichia coli, GI1787939, Length=358, Percent_Identity=33.7988826815642, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI1789463, Length=343, Percent_Identity=30.9037900874636, Blast_Score=131, Evalue=6e-32, Organism=Caenorhabditis elegans, GI17559804, Length=383, Percent_Identity=26.6318537859008, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17540738, Length=350, Percent_Identity=28.8571428571429, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17565138, Length=368, Percent_Identity=27.445652173913, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17559802, Length=352, Percent_Identity=27.8409090909091, Blast_Score=99, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17564188, Length=371, Percent_Identity=25.8760107816712, Blast_Score=98, Evalue=9e-21, Organism=Caenorhabditis elegans, GI72001454, Length=349, Percent_Identity=25.214899713467, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17566914, Length=273, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6321973, Length=365, Percent_Identity=29.3150684931507, Blast_Score=129, Evalue=5e-31, Organism=Saccharomyces cerevisiae, GI6325086, Length=364, Percent_Identity=29.1208791208791, Blast_Score=128, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR013027 - InterPro: IPR016040 - InterPro: IPR001155 - InterPro: IPR001327 - InterPro: IPR000103 [H]
Pfam domain/function: PF00724 Oxidored_FMN; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 39514; Mature: 39383
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETHKHVTAPFDRGHLKLKNRFAVAPMTRVSADEQGSATQAMTRYYERFAKGGFGLIIT CCCCCCCCCCCCCCCCEEECCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE EGNYTDRRFSQGYRFQPGLTDDEQAQAWRATTDAVHRHGSVMIAQLMHAGALSQANRFVS CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ESAGPSAIRPKGEQMAFYYGVGSYRVPRAMSDKDIAEAIDGFARAAQLAIGTAGFDGVEI CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE HGANGYLLDQFLTDYSNQRTDQWGGEVGQRLRLTLEVIAAVKKVAGQAPVGVRLSQGKVN ECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC DFQHKWAGGEGDAEVIFAALADAGVDYIHVTEHEAWQPAFTQGQASLVELARRYAPDVAL HHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHHCCCEEE IANGGLHDPQKADQVLRQGADIIAVGKGALANPDLPELLRQGAPLRDFDPAILGPIANIK EECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCCCC DSELV CCCCC >Mature Secondary Structure SETHKHVTAPFDRGHLKLKNRFAVAPMTRVSADEQGSATQAMTRYYERFAKGGFGLIIT CCCCCCCCCCCCCCCEEECCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE EGNYTDRRFSQGYRFQPGLTDDEQAQAWRATTDAVHRHGSVMIAQLMHAGALSQANRFVS CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ESAGPSAIRPKGEQMAFYYGVGSYRVPRAMSDKDIAEAIDGFARAAQLAIGTAGFDGVEI CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE HGANGYLLDQFLTDYSNQRTDQWGGEVGQRLRLTLEVIAAVKKVAGQAPVGVRLSQGKVN ECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC DFQHKWAGGEGDAEVIFAALADAGVDYIHVTEHEAWQPAFTQGQASLVELARRYAPDVAL HHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHHCCCEEE IANGGLHDPQKADQVLRQGADIIAVGKGALANPDLPELLRQGAPLRDFDPAILGPIANIK EECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCCCC DSELV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: FMN. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADPH; N-ethylmaleimide [C]
Specific reaction: NADPH + N-ethylmaleimide = NADP + Cytotoxic compound [C]
General reaction: Reduction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8357835 [H]