| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is btuB [H]
Identifier: 66046123
GI number: 66046123
Start: 3469016
End: 3471463
Strand: Reverse
Name: btuB [H]
Synonym: Psyr_2892
Alternate gene names: 66046123
Gene position: 3471463-3469016 (Counterclockwise)
Preceding gene: 66046124
Following gene: 66046122
Centisome position: 56.97
GC content: 59.76
Gene sequence:
>2448_bases ATGAAACAAGCCTTACAACGTGCCCGGGTATCGACTGCTGCAATGGGCTACTGCCCATTGGCCTTGGCGATAGGGGGCAT GTTGCTGTCAGGGACCATAAGAGCCCAGGAAAACAACACCGACGACCCGCGTACCTTGTCCACTGTGGTGGTCACCGGTA ATCGCGGTGCCGAGCAACGCACGGTCACCAGCAGCCCGGTGCCGATCGATGTGGTCAGCGCCAGACAGTTACAGAGCACC GGCAAGCCCGGACTGATGGAAGCCCTGAGCGCTGTGATTCCATCGCTGACCCTGCCGGAAAAAACCGGCTGGGACGCCAG CGGCATTGCCCGTGCGCCCAACTTGCGGGGTCTGAGCGCCGCCGAAGTGCTGGTGCTGGTCAATGGCAAACGCCGTCACA CCAGCGCCACCCTGAACATCAACGGCATCAATACCGGGGCTGCCCCTGCGGACCTGGACCTGATCCCCATCAGCGCCATC GACCATGTTGAAGTCCTGCGCGATGGCGCAGCGGCCCAATACGGTTCCGATGCGATTGCAGGGGTCATCAACGTCATCCT CAAGGCTGACACCAGTGGTACCTCGGTGACCAATGCCGGGCTCGGCTATGACGGCAAGAAGCAGACTGTGCAGCAAAGCC TCAACAAGGGGTTCGAGATCGGCGACGGGGGCATTGTGCAACTGGCGCTGGACGCCCGCAGCCAGAATGATGACAACAAG GCCAGCGCCAATGGTTACAGTTACGAGCAGGCCTATGACCTGGCGGGCAAGTCCACGTATGGCGGCTACGGCACGCCAAA GACTAATCTGCTGACCCTGGGGTACAACGCCGAACTGCCCGTCGATGGCAGTCTGAGCCTGTATTCCTTCACCACGTATT CACGTCGTAAGGCCGAGCAGGGGCAGAATTTTCGTCTGCCGACCATCACCAATACCATTACCACCGGGCCTAACGGATAT CCGGCGGGATACACGCCGACCTGGTACATCGATGAAGACGATGTTCAGGCAGCATTGGGCGGCAAGGGCGCCGTCGGCGA ATGGGATTGGGACCTGTCCAGCACTTATGGGCGCAACGAAGCCGAGCAGGGCACTACGCACAATCAGAACCCGTCCCTGG GTGAAGCCACACCCAACCGCTTTACTTCCGGCACGTGGATATCCACCGAACTGACCACCAATCTGGACTTTAAGCGCGGC TTCGACATCGGTCTGCAAAAGCCTCTGGATGTGTCCTATGGCCTCGAGCATCGGCGTGAGACGTACGAGGTGCAGGCCGG TGACTATGAATCCTATGCCAATGGCGGCTACTGCATTGCGCCGGGCAACTGCGCGTCTTCCGGAGCGCAAGTCACCAACG GTATTTCCCCTGACGAAGAAAACAGCGCCTCGCGTAACAGTGTCGCCAGTTATGTCGACGTGGGCTTCAACCCTGTACCG GACTGGTACGTTGGCAGCGCATTTCGCTACGAGCATTACAATCAGGGCGTGGGCGCGACCCGCAGCGGCAAGCTGACCAC GCGTTACGATTTCACTCCCCAATTCGCCGTACGTGCCACTGTCAGCAATGGCTTCCGTGCGCCGTCTCTGGCCAACAGCC TGTTCAGTGCACGCTCGACCACGTATGGCGTGGTGGACGGGGTCTATCAGTCCATCAACTACGGCGTGTTGCCGACCGGG TCGGGGGCCGCGAAGGCGCTGGGCGCGGAGGACCTCAAACCGGAGCGCTCGACCAACTTCAGCCTGGGTTTCACGCTCAC ACCGACCGAGCGCCTCACGCTGAGCGCCGACGCCTACGTGATTAATCTGCGTGACCGCATCACGCTGACCGGCACCTTGC TGGGCGATGAGGTCACGCAGGTGCTGCTCAACAATGGCATCGACTCGACGTCGGGTGGCCAGTACTTCATCAACGGTGCC GACACCCGTACCAAGGGGTTGGACCTGGTCAGCAATTACAGTCAGGACCTGGGGCCGTACGGGGCATTGAAGTGGACGGC GGCGTTCAACTGGAACCAGACGAAGATCCTCAGCTACAAGGAATTCACCTCGATTCTCGGTACGTCCTATGAACTGATGG ACCGCGAAGCGCGCAATCTGATCACCGGTGTGCAGCCGCGCACCAAGCTGATTCTGGGCGGTGACTGGAGTATCGAGCGC TTCAACCTGAATCTGGCGCTGACCCGCTACGGCGCTTACAAGGAGGTCAATTCCTCAGCCAATCGTGATCTGGACCGGGT GTACGGCACCAAATGGATCACCGATCTGGACCTTGGCTACAACCTCAGCAAAAACCTCAACGTCGCCGTCGGGGCCAAGA ACCTGTTCGACGTCTATCCCAAAAAGCAGGGGATTCCCAGCAGCACCATGGTCAGCAGCTACGGCACCTATTCGCCCTAC GGTTTTACTGGCGGCTATTACTACACCCGGCTGACTTACGCCTTTTAA
Upstream 100 bases:
>100_bases TTTTAAAACCGTGCATGCCGCGCCGTCCTCAAGACAGCGGGAGTGTCCGATTTCGCGATTTGGATGTGTGGCTGCGATGA CAGCCATGTCTGGAGTGGGT
Downstream 100 bases:
>100_bases GGCCAGCACCTGACAACTCAATATTGCGTGCGAGGAACCACCATGCCCATTGTCGCCAAACCCTATGACTTCATTGATGA GCCCAGTCATTATCCGCTTC
Product: TonB-dependent receptor:TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MKQALQRARVSTAAMGYCPLALAIGGMLLSGTIRAQENNTDDPRTLSTVVVTGNRGAEQRTVTSSPVPIDVVSARQLQST GKPGLMEALSAVIPSLTLPEKTGWDASGIARAPNLRGLSAAEVLVLVNGKRRHTSATLNINGINTGAAPADLDLIPISAI DHVEVLRDGAAAQYGSDAIAGVINVILKADTSGTSVTNAGLGYDGKKQTVQQSLNKGFEIGDGGIVQLALDARSQNDDNK ASANGYSYEQAYDLAGKSTYGGYGTPKTNLLTLGYNAELPVDGSLSLYSFTTYSRRKAEQGQNFRLPTITNTITTGPNGY PAGYTPTWYIDEDDVQAALGGKGAVGEWDWDLSSTYGRNEAEQGTTHNQNPSLGEATPNRFTSGTWISTELTTNLDFKRG FDIGLQKPLDVSYGLEHRRETYEVQAGDYESYANGGYCIAPGNCASSGAQVTNGISPDEENSASRNSVASYVDVGFNPVP DWYVGSAFRYEHYNQGVGATRSGKLTTRYDFTPQFAVRATVSNGFRAPSLANSLFSARSTTYGVVDGVYQSINYGVLPTG SGAAKALGAEDLKPERSTNFSLGFTLTPTERLTLSADAYVINLRDRITLTGTLLGDEVTQVLLNNGIDSTSGGQYFINGA DTRTKGLDLVSNYSQDLGPYGALKWTAAFNWNQTKILSYKEFTSILGTSYELMDREARNLITGVQPRTKLILGGDWSIER FNLNLALTRYGAYKEVNSSANRDLDRVYGTKWITDLDLGYNLSKNLNVAVGAKNLFDVYPKKQGIPSSTMVSSYGTYSPY GFTGGYYYTRLTYAF
Sequences:
>Translated_815_residues MKQALQRARVSTAAMGYCPLALAIGGMLLSGTIRAQENNTDDPRTLSTVVVTGNRGAEQRTVTSSPVPIDVVSARQLQST GKPGLMEALSAVIPSLTLPEKTGWDASGIARAPNLRGLSAAEVLVLVNGKRRHTSATLNINGINTGAAPADLDLIPISAI DHVEVLRDGAAAQYGSDAIAGVINVILKADTSGTSVTNAGLGYDGKKQTVQQSLNKGFEIGDGGIVQLALDARSQNDDNK ASANGYSYEQAYDLAGKSTYGGYGTPKTNLLTLGYNAELPVDGSLSLYSFTTYSRRKAEQGQNFRLPTITNTITTGPNGY PAGYTPTWYIDEDDVQAALGGKGAVGEWDWDLSSTYGRNEAEQGTTHNQNPSLGEATPNRFTSGTWISTELTTNLDFKRG FDIGLQKPLDVSYGLEHRRETYEVQAGDYESYANGGYCIAPGNCASSGAQVTNGISPDEENSASRNSVASYVDVGFNPVP DWYVGSAFRYEHYNQGVGATRSGKLTTRYDFTPQFAVRATVSNGFRAPSLANSLFSARSTTYGVVDGVYQSINYGVLPTG SGAAKALGAEDLKPERSTNFSLGFTLTPTERLTLSADAYVINLRDRITLTGTLLGDEVTQVLLNNGIDSTSGGQYFINGA DTRTKGLDLVSNYSQDLGPYGALKWTAAFNWNQTKILSYKEFTSILGTSYELMDREARNLITGVQPRTKLILGGDWSIER FNLNLALTRYGAYKEVNSSANRDLDRVYGTKWITDLDLGYNLSKNLNVAVGAKNLFDVYPKKQGIPSSTMVSSYGTYSPY GFTGGYYYTRLTYAF >Mature_815_residues MKQALQRARVSTAAMGYCPLALAIGGMLLSGTIRAQENNTDDPRTLSTVVVTGNRGAEQRTVTSSPVPIDVVSARQLQST GKPGLMEALSAVIPSLTLPEKTGWDASGIARAPNLRGLSAAEVLVLVNGKRRHTSATLNINGINTGAAPADLDLIPISAI DHVEVLRDGAAAQYGSDAIAGVINVILKADTSGTSVTNAGLGYDGKKQTVQQSLNKGFEIGDGGIVQLALDARSQNDDNK ASANGYSYEQAYDLAGKSTYGGYGTPKTNLLTLGYNAELPVDGSLSLYSFTTYSRRKAEQGQNFRLPTITNTITTGPNGY PAGYTPTWYIDEDDVQAALGGKGAVGEWDWDLSSTYGRNEAEQGTTHNQNPSLGEATPNRFTSGTWISTELTTNLDFKRG FDIGLQKPLDVSYGLEHRRETYEVQAGDYESYANGGYCIAPGNCASSGAQVTNGISPDEENSASRNSVASYVDVGFNPVP DWYVGSAFRYEHYNQGVGATRSGKLTTRYDFTPQFAVRATVSNGFRAPSLANSLFSARSTTYGVVDGVYQSINYGVLPTG SGAAKALGAEDLKPERSTNFSLGFTLTPTERLTLSADAYVINLRDRITLTGTLLGDEVTQVLLNNGIDSTSGGQYFINGA DTRTKGLDLVSNYSQDLGPYGALKWTAAFNWNQTKILSYKEFTSILGTSYELMDREARNLITGVQPRTKLILGGDWSIER FNLNLALTRYGAYKEVNSSANRDLDRVYGTKWITDLDLGYNLSKNLNVAVGAKNLFDVYPKKQGIPSSTMVSSYGTYSPY GFTGGYYYTRLTYAF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=174, Percent_Identity=34.4827586206897, Blast_Score=73, Evalue=8e-14, Organism=Escherichia coli, GI1788478, Length=142, Percent_Identity=31.6901408450704, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87608; Mature: 87608
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQALQRARVSTAAMGYCPLALAIGGMLLSGTIRAQENNTDDPRTLSTVVVTGNRGAEQR CHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCC TVTSSPVPIDVVSARQLQSTGKPGLMEALSAVIPSLTLPEKTGWDASGIARAPNLRGLSA EECCCCCCEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC AEVLVLVNGKRRHTSATLNINGINTGAAPADLDLIPISAIDHVEVLRDGAAAQYGSDAIA EEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHCCCHHHCCCHHHH GVINVILKADTSGTSVTNAGLGYDGKKQTVQQSLNKGFEIGDGGIVQLALDARSQNDDNK HHHHHHEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCEECCCCEEEEEEECCCCCCCCC ASANGYSYEQAYDLAGKSTYGGYGTPKTNLLTLGYNAELPVDGSLSLYSFTTYSRRKAEQ CCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHC GQNFRLPTITNTITTGPNGYPAGYTPTWYIDEDDVQAALGGKGAVGEWDWDLSSTYGRNE CCCEECCEECCEEECCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCC AEQGTTHNQNPSLGEATPNRFTSGTWISTELTTNLDFKRGFDIGLQKPLDVSYGLEHRRE CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCC TYEVQAGDYESYANGGYCIAPGNCASSGAQVTNGISPDEENSASRNSVASYVDVGFNPVP EEEEECCCCHHHCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC DWYVGSAFRYEHYNQGVGATRSGKLTTRYDFTPQFAVRATVSNGFRAPSLANSLFSARST CCCCCCEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHCCC TYGVVDGVYQSINYGVLPTGSGAAKALGAEDLKPERSTNFSLGFTLTPTERLTLSADAYV CHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEE INLRDRITLTGTLLGDEVTQVLLNNGIDSTSGGQYFINGADTRTKGLDLVSNYSQDLGPY EEECCCEEEEEEEHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC GALKWTAAFNWNQTKILSYKEFTSILGTSYELMDREARNLITGVQPRTKLILGGDWSIER CCEEEEEEECCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEE FNLNLALTRYGAYKEVNSSANRDLDRVYGTKWITDLDLGYNLSKNLNVAVGAKNLFDVYP EEEEEEEEECCCHHHHCCCCCCCHHHHHCCCEEEEECCCCCCCCCCEEEECCCHHHHCCC KKQGIPSSTMVSSYGTYSPYGFTGGYYYTRLTYAF CCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MKQALQRARVSTAAMGYCPLALAIGGMLLSGTIRAQENNTDDPRTLSTVVVTGNRGAEQR CHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCC TVTSSPVPIDVVSARQLQSTGKPGLMEALSAVIPSLTLPEKTGWDASGIARAPNLRGLSA EECCCCCCEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC AEVLVLVNGKRRHTSATLNINGINTGAAPADLDLIPISAIDHVEVLRDGAAAQYGSDAIA EEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHCCCHHHCCCHHHH GVINVILKADTSGTSVTNAGLGYDGKKQTVQQSLNKGFEIGDGGIVQLALDARSQNDDNK HHHHHHEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCEECCCCEEEEEEECCCCCCCCC ASANGYSYEQAYDLAGKSTYGGYGTPKTNLLTLGYNAELPVDGSLSLYSFTTYSRRKAEQ CCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHC GQNFRLPTITNTITTGPNGYPAGYTPTWYIDEDDVQAALGGKGAVGEWDWDLSSTYGRNE CCCEECCEECCEEECCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCC AEQGTTHNQNPSLGEATPNRFTSGTWISTELTTNLDFKRGFDIGLQKPLDVSYGLEHRRE CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCC TYEVQAGDYESYANGGYCIAPGNCASSGAQVTNGISPDEENSASRNSVASYVDVGFNPVP EEEEECCCCHHHCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC DWYVGSAFRYEHYNQGVGATRSGKLTTRYDFTPQFAVRATVSNGFRAPSLANSLFSARST CCCCCCEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHCCC TYGVVDGVYQSINYGVLPTGSGAAKALGAEDLKPERSTNFSLGFTLTPTERLTLSADAYV CHHHHHHHHHHCCCCEEECCCCHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEECCEEE INLRDRITLTGTLLGDEVTQVLLNNGIDSTSGGQYFINGADTRTKGLDLVSNYSQDLGPY EEECCCEEEEEEEHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCC GALKWTAAFNWNQTKILSYKEFTSILGTSYELMDREARNLITGVQPRTKLILGGDWSIER CCEEEEEEECCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEE FNLNLALTRYGAYKEVNSSANRDLDRVYGTKWITDLDLGYNLSKNLNVAVGAKNLFDVYP EEEEEEEEECCCHHHHCCCCCCCHHHHHCCCEEEEECCCCCCCCCCEEEECCCHHHHCCC KKQGIPSSTMVSSYGTYSPYGFTGGYYYTRLTYAF CCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA