Click here to switch to the map view.

The map label for this gene is dcrA [H]

Identifier: 66046109

GI number: 66046109

Start: 3453158

End: 3454786

Strand: Reverse

Name: dcrA [H]

Synonym: Psyr_2878

Alternate gene names: 66046109

Gene position: 3454786-3453158 (Counterclockwise)

Preceding gene: 66046113

Following gene: 66046108

Centisome position: 56.69

GC content: 60.59

Gene sequence:

>1629_bases
ATGCTGAGACAGCTGAAAATAGCCGCGCGGACCTCCGCCTGCTTTGCGTTGATGGTGGTGCTGGTGTTCGGGCTTGGTAT
TTTCAGCATTCAGCAATTGCACGGTATTCGTGAGCAATCGCTTGAAATAGAAAACGATGCGCTTCCCGGGATTGCGCTAG
GTGACGATATTGCCCTGGCGGTCGAGAAAACCCGCACGACGGTGGCCAAAATGCTTGCCGCTCATGATATGGCGCAGGTG
ACTCTGGCTCACACCGAGTTCCTTGACAGGAAGGCCGGGTTCCAAAAGGCCGTAGAGGCCTACGACCCGCTGATCACCGA
GGATGACGAGCGCGCGCTCGTCGAGGGGCTGAAGAGCACTTATCAGGGCTACATCGAGCGTGCCGAGAAGGTCTATACGC
TGATCAACGAGAATCAGGCGGAGGCCGGAAGGGCGCTGGTCTGGGGCGAGATGAAGGTCATGGCGGAAGGTATGGAAACG
GCCCTTGGCAAGCTGGAAAAGATCAATGATGACTCCGAAGCCGAATCCAGCGCAGCAGCGACGTCGGTGTATGAAAACGC
CCTGATCGTCACTCAGGGGGTCATGTTTCTGACGGTGTTGCTGACCGTATTGCTTGCCTGGCGTCTGACCAAAAGTCTGG
CAGTGCCGATCAGTCAGGCGCTGCACAGCTCGGAAACCATTGCCGCGGGCGACCTGCGTCCCAGCGCAATCAACCGTGAG
GGCACTGATGAAGCGGCCCTGTTGCTGCAATCGATGGAGCGCATGCGCGGCAATCTGAGCCAGACCCTGAGTCAGGTGGG
CGATGCCGCTCACCAGTTGGCGTCGGCCACGGAAGAAATGAGCGCCTTGATGGTCAACAGCAACGCCGATCTGGTGGTGC
AGAACAGCGAAATAGAAATGGCCGCCACCGCGGTCACCGAGATGAGTCAGGCGGTCGATGAAGTCGCGCGTAATGCGGTG
ACCACTTCGGTGGAATCCAGAGCCTCTTCGGTGTCGGCCCGCGAAGGTCAGGAAGAGCTCAATCAAACCGTCAAATCGAT
CCTTGAGCTGACCCGAAATGTGGGCACGGCGTCGGTCGAGGCGCAGGCGCTGGCAACCCGCACGCTGGATATCACCAAGG
TGCTGGATGTCATTCGCGCGGTGTCCGAGCAGACCAACCTGCTGGCGCTGAACGCTGCCATTGAAGCGGCACGCGCGGGC
GATGCCGGACGGGGTTTTGCCGTGGTCGCCGACGAGGTGCGCGCGCTGGCCCACCGCACCAGCGAATCGACGCGCGAGAT
CGAAACCATGGTCGGGCACATCCAGCAGGGCACCAAAAGTACCCTGCTTGCGCTTGAAGTCAGTACCGAACAGGCGCAAC
GCACCAAACAACAGGCCGAGTCGGCCAATGCCGTGCTGGCCAGCATCGCCAGCTCGGTTATGGTTATCGATGAGCGCAAT
ACGGTGATCGCCAGCGCCTCCGAGGAGCAGGCACTGGTTGCGCGGGAAGTGGACCGCAACCTGGTGCGCATCCGTGACTT
GTCGGCACAATCGGCGGTGCGCACCAGCCAGACCGGCAGCGCCAGCCAGTCGCTGGCCGAGCTGGCGAGTGACCTGACGA
TCACCCTGGGGCAATTCAAGCTCGGATAA

Upstream 100 bases:

>100_bases
GTGGCACCTCTCTGTTCAGAGCATCTTCATCCTTTGCCCTGTTCTGCCGATAGACATGACGGAGTTAATTTATTCACCGG
TCATGGGAAGGGGATTGAAG

Downstream 100 bases:

>100_bases
CACGCGCCGATAGCAGGCCTGTTCCCGCATCGATTCGCTGTTGTCCGTGCAACAGCAAATCGACAATGTGTTCGGCGTTG
ACGCCGGCAAAGCCAGGCCA

Product: histidine kinase, HAMP region: chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MLRQLKIAARTSACFALMVVLVFGLGIFSIQQLHGIREQSLEIENDALPGIALGDDIALAVEKTRTTVAKMLAAHDMAQV
TLAHTEFLDRKAGFQKAVEAYDPLITEDDERALVEGLKSTYQGYIERAEKVYTLINENQAEAGRALVWGEMKVMAEGMET
ALGKLEKINDDSEAESSAAATSVYENALIVTQGVMFLTVLLTVLLAWRLTKSLAVPISQALHSSETIAAGDLRPSAINRE
GTDEAALLLQSMERMRGNLSQTLSQVGDAAHQLASATEEMSALMVNSNADLVVQNSEIEMAATAVTEMSQAVDEVARNAV
TTSVESRASSVSAREGQEELNQTVKSILELTRNVGTASVEAQALATRTLDITKVLDVIRAVSEQTNLLALNAAIEAARAG
DAGRGFAVVADEVRALAHRTSESTREIETMVGHIQQGTKSTLLALEVSTEQAQRTKQQAESANAVLASIASSVMVIDERN
TVIASASEEQALVAREVDRNLVRIRDLSAQSAVRTSQTGSASQSLAELASDLTITLGQFKLG

Sequences:

>Translated_542_residues
MLRQLKIAARTSACFALMVVLVFGLGIFSIQQLHGIREQSLEIENDALPGIALGDDIALAVEKTRTTVAKMLAAHDMAQV
TLAHTEFLDRKAGFQKAVEAYDPLITEDDERALVEGLKSTYQGYIERAEKVYTLINENQAEAGRALVWGEMKVMAEGMET
ALGKLEKINDDSEAESSAAATSVYENALIVTQGVMFLTVLLTVLLAWRLTKSLAVPISQALHSSETIAAGDLRPSAINRE
GTDEAALLLQSMERMRGNLSQTLSQVGDAAHQLASATEEMSALMVNSNADLVVQNSEIEMAATAVTEMSQAVDEVARNAV
TTSVESRASSVSAREGQEELNQTVKSILELTRNVGTASVEAQALATRTLDITKVLDVIRAVSEQTNLLALNAAIEAARAG
DAGRGFAVVADEVRALAHRTSESTREIETMVGHIQQGTKSTLLALEVSTEQAQRTKQQAESANAVLASIASSVMVIDERN
TVIASASEEQALVAREVDRNLVRIRDLSAQSAVRTSQTGSASQSLAELASDLTITLGQFKLG
>Mature_542_residues
MLRQLKIAARTSACFALMVVLVFGLGIFSIQQLHGIREQSLEIENDALPGIALGDDIALAVEKTRTTVAKMLAAHDMAQV
TLAHTEFLDRKAGFQKAVEAYDPLITEDDERALVEGLKSTYQGYIERAEKVYTLINENQAEAGRALVWGEMKVMAEGMET
ALGKLEKINDDSEAESSAAATSVYENALIVTQGVMFLTVLLTVLLAWRLTKSLAVPISQALHSSETIAAGDLRPSAINRE
GTDEAALLLQSMERMRGNLSQTLSQVGDAAHQLASATEEMSALMVNSNADLVVQNSEIEMAATAVTEMSQAVDEVARNAV
TTSVESRASSVSAREGQEELNQTVKSILELTRNVGTASVEAQALATRTLDITKVLDVIRAVSEQTNLLALNAAIEAARAG
DAGRGFAVVADEVRALAHRTSESTREIETMVGHIQQGTKSTLLALEVSTEQAQRTKQQAESANAVLASIASSVMVIDERN
TVIASASEEQALVAREVDRNLVRIRDLSAQSAVRTSQTGSASQSLAELASDLTITLGQFKLG

Specific function: Receptor For The Attractant L-Serine And Related Amino Acids. Is Also Responsible For Chemotaxis Away From A Wide Range Of Repellents, Including Leucine, Indole, And Weak Acids. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of At

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=333, Percent_Identity=32.7327327327327, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787690, Length=355, Percent_Identity=30.4225352112676, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1788194, Length=384, Percent_Identity=28.3854166666667, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788195, Length=300, Percent_Identity=29, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1789453, Length=313, Percent_Identity=27.1565495207668, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 57982; Mature: 57982

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRQLKIAARTSACFALMVVLVFGLGIFSIQQLHGIREQSLEIENDALPGIALGDDIALA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEEECCCHHHH
VEKTRTTVAKMLAAHDMAQVTLAHTEFLDRKAGFQKAVEAYDPLITEDDERALVEGLKST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
YQGYIERAEKVYTLINENQAEAGRALVWGEMKVMAEGMETALGKLEKINDDSEAESSAAA
HHHHHHHHHHHHHHHCCCCHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TSVYENALIVTQGVMFLTVLLTVLLAWRLTKSLAVPISQALHSSETIAAGDLRPSAINRE
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
GTDEAALLLQSMERMRGNLSQTLSQVGDAAHQLASATEEMSALMVNSNADLVVQNSEIEM
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCHHH
AATAVTEMSQAVDEVARNAVTTSVESRASSVSAREGQEELNQTVKSILELTRNVGTASVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
AQALATRTLDITKVLDVIRAVSEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRT
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
SESTREIETMVGHIQQGTKSTLLALEVSTEQAQRTKQQAESANAVLASIASSVMVIDERN
CHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
TVIASASEEQALVAREVDRNLVRIRDLSAQSAVRTSQTGSASQSLAELASDLTITLGQFK
CEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCEEEECCEE
LG
CC
>Mature Secondary Structure
MLRQLKIAARTSACFALMVVLVFGLGIFSIQQLHGIREQSLEIENDALPGIALGDDIALA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEEECCCHHHH
VEKTRTTVAKMLAAHDMAQVTLAHTEFLDRKAGFQKAVEAYDPLITEDDERALVEGLKST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
YQGYIERAEKVYTLINENQAEAGRALVWGEMKVMAEGMETALGKLEKINDDSEAESSAAA
HHHHHHHHHHHHHHHCCCCHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TSVYENALIVTQGVMFLTVLLTVLLAWRLTKSLAVPISQALHSSETIAAGDLRPSAINRE
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
GTDEAALLLQSMERMRGNLSQTLSQVGDAAHQLASATEEMSALMVNSNADLVVQNSEIEM
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCHHH
AATAVTEMSQAVDEVARNAVTTSVESRASSVSAREGQEELNQTVKSILELTRNVGTASVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
AQALATRTLDITKVLDVIRAVSEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRT
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
SESTREIETMVGHIQQGTKSTLLALEVSTEQAQRTKQQAESANAVLASIASSVMVIDERN
CHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
TVIASASEEQALVAREVDRNLVRIRDLSAQSAVRTSQTGSASQSLAELASDLTITLGQFK
CEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCEEEECCEE
LG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]