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The map label for this gene is rbsB [H]

Identifier: 66046108

GI number: 66046108

Start: 3451909

End: 3452913

Strand: Reverse

Name: rbsB [H]

Synonym: Psyr_2877

Alternate gene names: 66046108

Gene position: 3452913-3451909 (Counterclockwise)

Preceding gene: 66046109

Following gene: 66046107

Centisome position: 56.66

GC content: 60.6

Gene sequence:

>1005_bases
ATGCCTGATGCCGTCCCGACCCCCAAGACCAAACGCCTGCATGCAATAGGGCGCACCCTGGTGCTGAGCCTGTTGGCCAC
CAGCCTCGTCGCAACCGCGTATGCCGAGGACAGCGACGTGCCTTCGCTGGCGGGTAAACGCATTGCGATCAGCATGACCG
GCACCAGTCACTACTTCGATATCAAGGCCTTCCAGGCGCAGGTGGATGAGGTCAAGCGCCTGGGCGGCACGCCCATCACG
CTCGATGCCGGTCGTAACGACAAGAACCTGGTCAATCAATTGCAGACCGTGGTCACGCAAAAGCCCGATGCAGTGATCCA
GACCCTCGGCACTCTCAGCGTTATCGACCCCTGGCTCAAGCGCATCAGCAAGGCGGGGATTCCGCTGTTCACCATTGATG
CGCCATCGCAATACAGCCTCAACAACACTACCTCCGACAACGTTGCCACCGGCAAGGCACTGGCCGGGCAACTGATCAAG
GACGCAGGTGGCCAGGGTAACGTGCTGGTGTTCAATGGCTTTTATGGCGTGCCGGTCTGCGCCATTCGTTATGACCAGCT
CAAGTTGGCGCTCAAGGATCATCCGCAGCTGAAAATCATCGAGCCGGAGTTGCGCGATGTCATTCCCAACACGGTCCAGG
ACGCCTATTCGCAAGTCTCGGCGTTGCTCAACAAGTACCCCAAAGGCAGTGTTTCGGCGATCTGGGCCGCGTGGGACATT
CCCCAGCTTGGCGCCAGCAAGGCGCTGATCGACGCCGGCAGAACCGAAATCAAGACCTACGGCGTCGACGGCACGCCGGA
GGTGCTCGAGCTGATGCGCCGCGAAGATTCGCCGGTGGGTGCTGTGGTTGCCCAGCAGCCTGCATTGATCGGCAAGACTG
CGGTGCAGAACGTCGCCCGTTACCTGGCCGGGCAGCACGATCTGCCAAAGGAGACCCAAGTGCCCACCTTGCTGACCACG
GCCGCCAATCTGCCGGATGTGCAAAAGCTCAGAGGCGATAACTGA

Upstream 100 bases:

>100_bases
CGCAGGGCTTCACGCCATCGCCAAGCACAGCACAAGGCTTTGGGCATGACCTGTGCACTGCCGATCAGGATTGTTTTCCT
GAGCCAGCGGAGCCACCCGA

Downstream 100 bases:

>100_bases
CGCGGGAGATCGATCATGGGATCAGCGATTACAGACGTTGCGGCGGTGCCACCGGCCTTGCACCTGAGAGGTATCAGCAA
GCGCTTTGGGGCCACTCAGG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MPDAVPTPKTKRLHAIGRTLVLSLLATSLVATAYAEDSDVPSLAGKRIAISMTGTSHYFDIKAFQAQVDEVKRLGGTPIT
LDAGRNDKNLVNQLQTVVTQKPDAVIQTLGTLSVIDPWLKRISKAGIPLFTIDAPSQYSLNNTTSDNVATGKALAGQLIK
DAGGQGNVLVFNGFYGVPVCAIRYDQLKLALKDHPQLKIIEPELRDVIPNTVQDAYSQVSALLNKYPKGSVSAIWAAWDI
PQLGASKALIDAGRTEIKTYGVDGTPEVLELMRREDSPVGAVVAQQPALIGKTAVQNVARYLAGQHDLPKETQVPTLLTT
AANLPDVQKLRGDN

Sequences:

>Translated_334_residues
MPDAVPTPKTKRLHAIGRTLVLSLLATSLVATAYAEDSDVPSLAGKRIAISMTGTSHYFDIKAFQAQVDEVKRLGGTPIT
LDAGRNDKNLVNQLQTVVTQKPDAVIQTLGTLSVIDPWLKRISKAGIPLFTIDAPSQYSLNNTTSDNVATGKALAGQLIK
DAGGQGNVLVFNGFYGVPVCAIRYDQLKLALKDHPQLKIIEPELRDVIPNTVQDAYSQVSALLNKYPKGSVSAIWAAWDI
PQLGASKALIDAGRTEIKTYGVDGTPEVLELMRREDSPVGAVVAQQPALIGKTAVQNVARYLAGQHDLPKETQVPTLLTT
AANLPDVQKLRGDN
>Mature_333_residues
PDAVPTPKTKRLHAIGRTLVLSLLATSLVATAYAEDSDVPSLAGKRIAISMTGTSHYFDIKAFQAQVDEVKRLGGTPITL
DAGRNDKNLVNQLQTVVTQKPDAVIQTLGTLSVIDPWLKRISKAGIPLFTIDAPSQYSLNNTTSDNVATGKALAGQLIKD
AGGQGNVLVFNGFYGVPVCAIRYDQLKLALKDHPQLKIIEPELRDVIPNTVQDAYSQVSALLNKYPKGSVSAIWAAWDIP
QLGASKALIDAGRTEIKTYGVDGTPEVLELMRREDSPVGAVVAQQPALIGKTAVQNVARYLAGQHDLPKETQVPTLLTTA
ANLPDVQKLRGDN

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=287, Percent_Identity=25.0871080139373, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35805; Mature: 35674

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDAVPTPKTKRLHAIGRTLVLSLLATSLVATAYAEDSDVPSLAGKRIAISMTGTSHYFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEECCCCEEEE
IKAFQAQVDEVKRLGGTPITLDAGRNDKNLVNQLQTVVTQKPDAVIQTLGTLSVIDPWLK
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RISKAGIPLFTIDAPSQYSLNNTTSDNVATGKALAGQLIKDAGGQGNVLVFNGFYGVPVC
HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEE
AIRYDQLKLALKDHPQLKIIEPELRDVIPNTVQDAYSQVSALLNKYPKGSVSAIWAAWDI
EEEHHHHHHHCCCCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
PQLGASKALIDAGRTEIKTYGVDGTPEVLELMRREDSPVGAVVAQQPALIGKTAVQNVAR
CCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH
YLAGQHDLPKETQVPTLLTTAANLPDVQKLRGDN
HHCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
PDAVPTPKTKRLHAIGRTLVLSLLATSLVATAYAEDSDVPSLAGKRIAISMTGTSHYFD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEECCCCEEEE
IKAFQAQVDEVKRLGGTPITLDAGRNDKNLVNQLQTVVTQKPDAVIQTLGTLSVIDPWLK
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RISKAGIPLFTIDAPSQYSLNNTTSDNVATGKALAGQLIKDAGGQGNVLVFNGFYGVPVC
HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEE
AIRYDQLKLALKDHPQLKIIEPELRDVIPNTVQDAYSQVSALLNKYPKGSVSAIWAAWDI
EEEHHHHHHHCCCCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
PQLGASKALIDAGRTEIKTYGVDGTPEVLELMRREDSPVGAVVAQQPALIGKTAVQNVAR
CCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH
YLAGQHDLPKETQVPTLLTTAANLPDVQKLRGDN
HHCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]