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The map label for this gene is ymfK [C]

Identifier: 66046048

GI number: 66046048

Start: 3388088

End: 3388738

Strand: Direct

Name: ymfK [C]

Synonym: Psyr_2812

Alternate gene names: 66046048

Gene position: 3388088-3388738 (Clockwise)

Preceding gene: 66046040

Following gene: 66046049

Centisome position: 55.6

GC content: 58.99

Gene sequence:

>651_bases
ATGACTACACTCGCCCAAAGACTGAAACTCGCTCGAGCGCACGCCAAGATCACCCAGCGAAAGCTGGCGGAGCTCGCGGG
CGTAGAGCAGCCCGCTATATCCCAAATGGAAAGCGGAAAGACGCTCAAGTCCGCGCATCTCGTCGCGCTGGCCAAGGCTT
GCGGCGTGAATGCTGACTGGCTTGCCACCGGTACTGGTCAAATGGCCAGCGAGCAGTCAAACGTGGAGATAGTCGAACAG
CCCTCGCGCATGTACCGCTACCCTGTAGTGAGCTGGGTCGCAGCTGGCGAGTGGTCGGAAGCGGTTGAGCCTTATGCGCC
AGGTGCTGCTGATGAGTACGACGTGTCTGACTACAAGGCCAAGGGCCCGGCGTTTTGGCTGATGGTTAAAGGGGACTCGA
TGACGGCACCTACTGCCCCTTCGATTCCAGAGGGCTCACAGATACTCGTAGACACCCGGGCAGAAGTACTCCCAGGCAAG
CTGGTGATCGCGAAGCTGGGCGGCAGCAACGAGGCGACTTTCAAGAAGCTGGTAGAAGATGGCGGCGTCAGATACCTGAA
GCCCCTGAACTCTGCCTATCCGACCGTGCAGTGCTCGGATGACTGCAGGATCATCGGCGTGGTGGTCAGGTCGCTGACTA
AATTTGCATGA

Upstream 100 bases:

>100_bases
CAATGGGGGTCATAGCGTCAACTCCTGATAAGCATGCTTATATCGTATTGATAAGAAGGCTTATTTGCAAGCATATAAGG
GACCTTATAAGTTGCTATGC

Downstream 100 bases:

>100_bases
AAGCCGAGTCATATGGCCCGGCGGGAATTCGTAGGGGTACCAGTCATGGGATTGACGAAGCCGAATCAACAATTGGCACG
CGACCTACAGGGCCTCGCCT

Product: peptidase

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTTLAQRLKLARAHAKITQRKLAELAGVEQPAISQMESGKTLKSAHLVALAKACGVNADWLATGTGQMASEQSNVEIVEQ
PSRMYRYPVVSWVAAGEWSEAVEPYAPGAADEYDVSDYKAKGPAFWLMVKGDSMTAPTAPSIPEGSQILVDTRAEVLPGK
LVIAKLGGSNEATFKKLVEDGGVRYLKPLNSAYPTVQCSDDCRIIGVVVRSLTKFA

Sequences:

>Translated_216_residues
MTTLAQRLKLARAHAKITQRKLAELAGVEQPAISQMESGKTLKSAHLVALAKACGVNADWLATGTGQMASEQSNVEIVEQ
PSRMYRYPVVSWVAAGEWSEAVEPYAPGAADEYDVSDYKAKGPAFWLMVKGDSMTAPTAPSIPEGSQILVDTRAEVLPGK
LVIAKLGGSNEATFKKLVEDGGVRYLKPLNSAYPTVQCSDDCRIIGVVVRSLTKFA
>Mature_215_residues
TTLAQRLKLARAHAKITQRKLAELAGVEQPAISQMESGKTLKSAHLVALAKACGVNADWLATGTGQMASEQSNVEIVEQP
SRMYRYPVVSWVAAGEWSEAVEPYAPGAADEYDVSDYKAKGPAFWLMVKGDSMTAPTAPSIPEGSQILVDTRAEVLPGKL
VIAKLGGSNEATFKKLVEDGGVRYLKPLNSAYPTVQCSDDCRIIGVVVRSLTKFA

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=161, Percent_Identity=33.5403726708075, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 23170; Mature: 23039

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLAQRLKLARAHAKITQRKLAELAGVEQPAISQMESGKTLKSAHLVALAKACGVNADW
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
LATGTGQMASEQSNVEIVEQPSRMYRYPVVSWVAAGEWSEAVEPYAPGAADEYDVSDYKA
EECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCC
KGPAFWLMVKGDSMTAPTAPSIPEGSQILVDTRAEVLPGKLVIAKLGGSNEATFKKLVED
CCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHHCCCEEEEEEECCCCHHHHHHHHHH
GGVRYLKPLNSAYPTVQCSDDCRIIGVVVRSLTKFA
CCCEEECHHCCCCCEEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTLAQRLKLARAHAKITQRKLAELAGVEQPAISQMESGKTLKSAHLVALAKACGVNADW
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
LATGTGQMASEQSNVEIVEQPSRMYRYPVVSWVAAGEWSEAVEPYAPGAADEYDVSDYKA
EECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCC
KGPAFWLMVKGDSMTAPTAPSIPEGSQILVDTRAEVLPGKLVIAKLGGSNEATFKKLVED
CCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHHCCCEEEEEEECCCCHHHHHHHHHH
GGVRYLKPLNSAYPTVQCSDDCRIIGVVVRSLTKFA
CCCEEECHHCCCCCEEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]