Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 66045901

GI number: 66045901

Start: 3235541

End: 3236047

Strand: Direct

Name: yddE [C]

Synonym: Psyr_2665

Alternate gene names: 66045901

Gene position: 3235541-3236047 (Clockwise)

Preceding gene: 66045898

Following gene: 66045904

Centisome position: 53.1

GC content: 50.49

Gene sequence:

>507_bases
ATGTATTTAGGGTTACTTTTCCCACGTAACCCGACCTACGAGAGCTTTATGCCCAATACACTGAGTTTTCACCAGGTTGA
TGTATTCGCCAGTAAGCCCTTGGAAGGCAATGCACTCGCAGTCGTAAGCGACGCTGATGATCTGACCGCCGAACAAATGG
CCGCATTCGCACGTTGGACAAACCTTAGCGAGACTACATTTCTCATGCGTCCTACCCATCCTGATAACGTAGGAGCCTTT
GCCCATTGGATCGGACTAGATGCACGAGCTGATATCGAAGTTAGAGCCTTCATTAGCAACAGGTCTGCCGAAGACCCTGT
TACTGGCAGCCTTAATGCCAGCCTTGCCCAATGGCTAATACCAGCCGGGCTAATGCCGAAAAGATATACCGTCAGCCAAG
GTACGGCGTTGGGGCGTCACGGACGAATTCAGGTGGAACACATTGGCGAGCGCATCTGGATTGGTGGGGAAGTACAAAAA
TGCATTACCGGTCGAGTCTCTTTTTAA

Upstream 100 bases:

>100_bases
AGCGCTGTCGCGATACCTCGATGACCAGGTCGTACGCATTAGCATCAAGTGGGTCGAGAACCAGATCCAACCATGCGCAC
CTGGTGGACACTATCCTGCG

Downstream 100 bases:

>100_bases
CCGGTGCAGATGACTAAAAATCAGGTTGAGCCGAGGCCCCTGTGCGCCAGCAGAACAACCGCCCTCGCCCAGCCTTAAAA
CCCCTGAGATTGATAACTCA

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: Phenazine Biosynthesis Protein PhzF Family; Phenazine Biosynthesis Protein; Phenazine Biosynthesis PhzC/PhzF Protein; Antibiotic Biosynthesis Protein; Phenazine Biosynthesis Protein Phzf Family; Phenazine Biosynthesis Protein PhzF; Epimerase; Phenazine Biosynthesis-Like Protein; PhzC/PhzF Phenazine Biosynthesis Family Protein; Phenazine-Like Biosynthesis Protein; Antibiotic Biosynthesis-Like Protein; Epimerase PhzC/PhzF; Diaminopimelate Epimerase; Phenazine Biosynthesis PhzF Family Protein; Epimerase PhzF-Like Protein

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MYLGLLFPRNPTYESFMPNTLSFHQVDVFASKPLEGNALAVVSDADDLTAEQMAAFARWTNLSETTFLMRPTHPDNVGAF
AHWIGLDARADIEVRAFISNRSAEDPVTGSLNASLAQWLIPAGLMPKRYTVSQGTALGRHGRIQVEHIGERIWIGGEVQK
CITGRVSF

Sequences:

>Translated_168_residues
MYLGLLFPRNPTYESFMPNTLSFHQVDVFASKPLEGNALAVVSDADDLTAEQMAAFARWTNLSETTFLMRPTHPDNVGAF
AHWIGLDARADIEVRAFISNRSAEDPVTGSLNASLAQWLIPAGLMPKRYTVSQGTALGRHGRIQVEHIGERIWIGGEVQK
CITGRVSF
>Mature_168_residues
MYLGLLFPRNPTYESFMPNTLSFHQVDVFASKPLEGNALAVVSDADDLTAEQMAAFARWTNLSETTFLMRPTHPDNVGAF
AHWIGLDARADIEVRAFISNRSAEDPVTGSLNASLAQWLIPAGLMPKRYTVSQGTALGRHGRIQVEHIGERIWIGGEVQK
CITGRVSF

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18546; Mature: 18546

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLGLLFPRNPTYESFMPNTLSFHQVDVFASKPLEGNALAVVSDADDLTAEQMAAFARWT
CEEEEECCCCCCHHHCCCCCCCEEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHC
NLSETTFLMRPTHPDNVGAFAHWIGLDARADIEVRAFISNRSAEDPVTGSLNASLAQWLI
CCCCEEEEECCCCCCCCCCEEHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
PAGLMPKRYTVSQGTALGRHGRIQVEHIGERIWIGGEVQKCITGRVSF
CCCCCCCEEECCCCCCCCCCCCEEEEECCCEEEECCCHHHHHCCCCCC
>Mature Secondary Structure
MYLGLLFPRNPTYESFMPNTLSFHQVDVFASKPLEGNALAVVSDADDLTAEQMAAFARWT
CEEEEECCCCCCHHHCCCCCCCEEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHC
NLSETTFLMRPTHPDNVGAFAHWIGLDARADIEVRAFISNRSAEDPVTGSLNASLAQWLI
CCCCEEEEECCCCCCCCCCEEHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
PAGLMPKRYTVSQGTALGRHGRIQVEHIGERIWIGGEVQKCITGRVSF
CCCCCCCEEECCCCCCCCCCCCEEEEECCCEEEECCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA