| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is lolD2 [H]
Identifier: 66045864
GI number: 66045864
Start: 3188330
End: 3189022
Strand: Reverse
Name: lolD2 [H]
Synonym: Psyr_2628
Alternate gene names: 66045864
Gene position: 3189022-3188330 (Counterclockwise)
Preceding gene: 66045865
Following gene: 66045863
Centisome position: 52.33
GC content: 57.58
Gene sequence:
>693_bases ATGCTCCAGATCAAAGGACTGAATGTGCAGCGAGGGAGCGGCGTACAGGCACATCGGGTACAGCTGCCCGAGCTGAGTCT GACTCGTGGGCAGGTCGTGGCGATTACCGGCGAAAGTGGGTGCGGCAAGAGCACCCTGCTTGAGGCTCTTGGTTTGCTGT TGGCGCCTGAAAGCGTCGCGCACTATTGCCTTGATGGTATGGACATCGCAGCTTTGCTTAAGGCTGATGATCAACCTGCA CTGGCTGATGTAAGAGCGCGATCATTGGGCTTTGTTCTGCAAAGCGGCGGACTGCTGCCGTTTCTCAACGCCCGGGACAA CATCAACCTGCCCCGTCGGCTACTGGGGCTGGCCAGCAAAAGTGATCACGTTGAAAGAGCCATTGCTGCGCTGCACCTGG AGACGTTGCTGGACCAATTTCCCCAGGCTCTGTCTATCGGCGAACGTCAACGCGTGGCCTGCGTGCGCGCCATTGCCCAT CAGCCGCGCCTGATACTCGCCGACGAACCTACAGCTGCCCTGGATCCACATAACGCTCGGCAGCTGTTCGAGTTGTTATT GGGCCTGGTCGCTGAGCTGGGTTTGAGTGCTCTTATTGTTTCGCACGATTGGCAACTGGTGAACAGCTTTGGCATCACCC GTTTGAATGCCGTCAGCCTGCCTGGAGTGACGCGTTTTGAAACGTCCCTTTGA
Upstream 100 bases:
>100_bases CAGGTATACAACGCAGATGTGGACCGCTGGGTGCCGTTGGCCGAGGGTAGTGATGCCCGTGACAATGTTTATCCGGTGCC ACTGGAAATGATGCCCTGAC
Downstream 100 bases:
>100_bases GCGCCTCGGCCTTCTGGCAAACCTGGCCATTGCAGACTTGTGGCATGACCGCAAAGTGTCGCTATGCATTGCGGCTTCGC TGGTCGCCGTCATCGCCCCG
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MLQIKGLNVQRGSGVQAHRVQLPELSLTRGQVVAITGESGCGKSTLLEALGLLLAPESVAHYCLDGMDIAALLKADDQPA LADVRARSLGFVLQSGGLLPFLNARDNINLPRRLLGLASKSDHVERAIAALHLETLLDQFPQALSIGERQRVACVRAIAH QPRLILADEPTAALDPHNARQLFELLLGLVAELGLSALIVSHDWQLVNSFGITRLNAVSLPGVTRFETSL
Sequences:
>Translated_230_residues MLQIKGLNVQRGSGVQAHRVQLPELSLTRGQVVAITGESGCGKSTLLEALGLLLAPESVAHYCLDGMDIAALLKADDQPA LADVRARSLGFVLQSGGLLPFLNARDNINLPRRLLGLASKSDHVERAIAALHLETLLDQFPQALSIGERQRVACVRAIAH QPRLILADEPTAALDPHNARQLFELLLGLVAELGLSALIVSHDWQLVNSFGITRLNAVSLPGVTRFETSL >Mature_230_residues MLQIKGLNVQRGSGVQAHRVQLPELSLTRGQVVAITGESGCGKSTLLEALGLLLAPESVAHYCLDGMDIAALLKADDQPA LADVRARSLGFVLQSGGLLPFLNARDNINLPRRLLGLASKSDHVERAIAALHLETLLDQFPQALSIGERQRVACVRAIAH QPRLILADEPTAALDPHNARQLFELLLGLVAELGLSALIVSHDWQLVNSFGITRLNAVSLPGVTRFETSL
Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=165, Percent_Identity=31.5151515151515, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI153792144, Length=160, Percent_Identity=31.875, Blast_Score=72, Evalue=6e-13, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=40.5, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1786703, Length=185, Percent_Identity=41.0810810810811, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787105, Length=184, Percent_Identity=38.0434782608696, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=34.2723004694836, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786398, Length=183, Percent_Identity=34.4262295081967, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789032, Length=187, Percent_Identity=33.6898395721925, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI87081791, Length=190, Percent_Identity=31.5789473684211, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789962, Length=189, Percent_Identity=35.4497354497354, Blast_Score=91, Evalue=4e-20, Organism=Escherichia coli, GI1788761, Length=185, Percent_Identity=34.5945945945946, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI87081709, Length=181, Percent_Identity=30.939226519337, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787029, Length=207, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790162, Length=215, Percent_Identity=35.3488372093023, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787370, Length=188, Percent_Identity=32.9787234042553, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788225, Length=186, Percent_Identity=32.7956989247312, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=33.495145631068, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=37.2972972972973, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787164, Length=181, Percent_Identity=37.5690607734807, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787758, Length=195, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1789672, Length=203, Percent_Identity=29.5566502463054, Blast_Score=80, Evalue=8e-17, Organism=Escherichia coli, GI48994997, Length=200, Percent_Identity=33.5, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790467, Length=181, Percent_Identity=33.7016574585635, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI145693107, Length=199, Percent_Identity=32.1608040201005, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786872, Length=170, Percent_Identity=32.9411764705882, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI48994943, Length=203, Percent_Identity=28.0788177339901, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=32.3529411764706, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=181, Percent_Identity=29.8342541436464, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787500, Length=190, Percent_Identity=29.4736842105263, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788450, Length=182, Percent_Identity=32.967032967033, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789586, Length=196, Percent_Identity=35.2040816326531, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786698, Length=188, Percent_Identity=29.2553191489362, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788506, Length=204, Percent_Identity=32.3529411764706, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1786981, Length=172, Percent_Identity=34.8837209302326, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786253, Length=182, Percent_Identity=31.3186813186813, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788644, Length=172, Percent_Identity=33.1395348837209, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789963, Length=219, Percent_Identity=31.0502283105023, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081782, Length=181, Percent_Identity=26.5193370165746, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787792, Length=231, Percent_Identity=28.1385281385281, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48995001, Length=188, Percent_Identity=30.8510638297872, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1790544, Length=193, Percent_Identity=31.6062176165803, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787712, Length=182, Percent_Identity=29.6703296703297, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787548, Length=227, Percent_Identity=27.7533039647577, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1790190, Length=208, Percent_Identity=27.4038461538462, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786803, Length=190, Percent_Identity=32.1052631578947, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789593, Length=182, Percent_Identity=30.2197802197802, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787547, Length=187, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI48994883, Length=193, Percent_Identity=29.0155440414508, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788053, Length=188, Percent_Identity=30.3191489361702, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787759, Length=220, Percent_Identity=30, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1786345, Length=200, Percent_Identity=32, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115533592, Length=196, Percent_Identity=30.1020408163265, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI24582014, Length=199, Percent_Identity=26.6331658291457, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582012, Length=199, Percent_Identity=26.6331658291457, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015854 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 24674; Mature: 24674
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQIKGLNVQRGSGVQAHRVQLPELSLTRGQVVAITGESGCGKSTLLEALGLLLAPESVA CEEECCCCEECCCCCCHHEEECCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHH HYCLDGMDIAALLKADDQPALADVRARSLGFVLQSGGLLPFLNARDNINLPRRLLGLASK HHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC SDHVERAIAALHLETLLDQFPQALSIGERQRVACVRAIAHQPRLILADEPTAALDPHNAR HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHH QLFELLLGLVAELGLSALIVSHDWQLVNSFGITRLNAVSLPGVTRFETSL HHHHHHHHHHHHHCHHEEEHHCCHHHHHHCCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure MLQIKGLNVQRGSGVQAHRVQLPELSLTRGQVVAITGESGCGKSTLLEALGLLLAPESVA CEEECCCCEECCCCCCHHEEECCCEECCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHH HYCLDGMDIAALLKADDQPALADVRARSLGFVLQSGGLLPFLNARDNINLPRRLLGLASK HHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC SDHVERAIAALHLETLLDQFPQALSIGERQRVACVRAIAHQPRLILADEPTAALDPHNAR HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHH QLFELLLGLVAELGLSALIVSHDWQLVNSFGITRLNAVSLPGVTRFETSL HHHHHHHHHHHHHCHHEEEHHCCHHHHHHCCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA