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The map label for this gene is fecI [H]

Identifier: 66045816

GI number: 66045816

Start: 3022000

End: 3022509

Strand: Direct

Name: fecI [H]

Synonym: Psyr_2580

Alternate gene names: 66045816

Gene position: 3022000-3022509 (Clockwise)

Preceding gene: 66045813

Following gene: 66045817

Centisome position: 49.59

GC content: 60.0

Gene sequence:

>510_bases
ATGACTGACGCAGCGACGCTATCACAGCAGACCTTGCATTCCCTGTACCGCGATCATCATGGCTGGCTGGAAAGCTGGCT
GCGCAGACGCATGGGCAATGCCTGGGATGCTGCTGACCTGAGTCAGGATACGTTTCTGCGCGTGCTGTCCAGCTCCCAGC
AGATCGCCGATATGCAGGAGCCGCGTGCCTATCTGCTGACAGTGGGCAAGCGCCTGCTCAGTAATTTCTACACTCGTCGC
AGCCTTGAACAGGCTTATCTGGAAGCGCTGGCGCAGTTGCCTGAAGAAAGCGTGCCGTCGCCGGAGCAGCGCTGGTTGCT
GCTGGAAACCCTGCAGGCGCTGGACGAGCTGCTCGATGGCCTGTCGGCAGTGGTGCGCCGGGCGTTTCTCTGGAGTCAGC
TCGAGGGGCTGGGCTATCGGGAAATCGCTGAACGCCTGAGTGTTTCCGAACGCACCGTCAAACGCTATATGGCACAAGCC
TACGAGCACTGTCTGTTGGTGGACTGGTGA

Upstream 100 bases:

>100_bases
GTGGCGATGGGGCTTTTGAAAAAAAAGAGCGTGGACTCGGGATATAACACTAATTAGAATCAGTCTCATTTGGCGCATCC
CATCGCTCAAGGCTTTTGAC

Downstream 100 bases:

>100_bases
TTCGCCCGGCACCTTCGAACGAAGAACGCGAGGTAGTACGCAAAGCGGCGCAGTGGCTGGCGCTTCTCGAGTCCGGCGGT
GCCAGCGAGGAAGATCACGC

Product: sigma-70 region 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTDAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQEPRAYLLTVGKRLLSNFYTRR
SLEQAYLEALAQLPEESVPSPEQRWLLLETLQALDELLDGLSAVVRRAFLWSQLEGLGYREIAERLSVSERTVKRYMAQA
YEHCLLVDW

Sequences:

>Translated_169_residues
MTDAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQEPRAYLLTVGKRLLSNFYTRR
SLEQAYLEALAQLPEESVPSPEQRWLLLETLQALDELLDGLSAVVRRAFLWSQLEGLGYREIAERLSVSERTVKRYMAQA
YEHCLLVDW
>Mature_168_residues
TDAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQEPRAYLLTVGKRLLSNFYTRRS
LEQAYLEALAQLPEESVPSPEQRWLLLETLQALDELLDGLSAVVRRAFLWSQLEGLGYREIAERLSVSERTVKRYMAQAY
EHCLLVDW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=167, Percent_Identity=52.6946107784431, Blast_Score=180, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19658; Mature: 19526

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
PRAYLLTVGKRLLSNFYTRRSLEQAYLEALAQLPEESVPSPEQRWLLLETLQALDELLDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAVVRRAFLWSQLEGLGYREIAERLSVSERTVKRYMAQAYEHCLLVDW
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDAATLSQQTLHSLYRDHHGWLESWLRRRMGNAWDAADLSQDTFLRVLSSSQQIADMQE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
PRAYLLTVGKRLLSNFYTRRSLEQAYLEALAQLPEESVPSPEQRWLLLETLQALDELLDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAVVRRAFLWSQLEGLGYREIAERLSVSERTVKRYMAQAYEHCLLVDW
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]