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The map label for this gene is rbsC [H]

Identifier: 66045806

GI number: 66045806

Start: 2983859

End: 2984836

Strand: Reverse

Name: rbsC [H]

Synonym: Psyr_2570

Alternate gene names: 66045806

Gene position: 2984836-2983859 (Counterclockwise)

Preceding gene: 66045807

Following gene: 66045805

Centisome position: 48.98

GC content: 60.63

Gene sequence:

>978_bases
ATGAATGCAAAAACCATTATCGCCCCAGCTTCCACGTCTCCACGCAGCCGCCTGCGCCTGTCTCTCGACCGTTTCGGCCT
GCCGTTGGTGTTTATTCTGTTGTGCCTGGTACTGGCTTTTGCCAGCGAATATTTCATGACCTGGCGCAACTGGATGGACA
TCCTGCGCCAGACCTCGATCAACGGCATTCTCGCGGTCGGCATGACCTACGTGATCCTGACCAAGGGCATCGACCTTTCC
GTCGGCTCGATTCTGGCGTTCGCCGGATTGTGCAGCGCACTGGTCGCGACCCAGGGCTATGGCCTGCTGGCGGCGGTCAG
CGCAGGCATGTTTGCCGGTGCCATGCTCGGCGTAGTCAATGGCTTCATGGTCGCCAATCTTTCGATTCCACCGTTTGTGG
CCACCTTGGGCATGCTCAGCATCGCCCGCGGCATGACCTTCATCCTCAACGACGGCAGCCCGGTGACCGACCTGCCCGAA
GAATACCTGGCGTTGGGCATCGGCCGGATCGGCCCGATTGGTGTGCCGATCATTATCTTCGCGGTGGTCGCGCTGATTTT
CTGGATGGTACTGCGCTACACCACCTACGGCCGTTACGTGTACGCCGTCGGCGGCAACGAAAAGAGCGCGCGCACCTCCG
GTATCGGTGTGCGCAAGGTGATGTTTTCGGTGTACGTGGTTTCCGGGCTGCTCGCCGGACTGGCAGGCGTAGTGCTGTCC
GCCAGAACCACCTCCGCCCTGCCCCAGGCCGGCATGTCCTACGAACTGGACGCCATCGCAGCAGTGGTCATCGGCGGCAC
CAGCCTGTCGGGCGGTACTGGCAGCATCGTTGGCACACTGTTTGGCGCACTGCTGATCGGCGTGATCAACAACGGCCTGA
ACCTGCTCGGCGTGTCCTCCTATTACCAGCAGGTCGCCAAGGGCCTGATCATCGTGTTCGCAGTGTTGATTGATGTGTGG
CGCAAGAAAAAACGCTAG

Upstream 100 bases:

>100_bases
TGCGCCTGAGTGACCGAATCGCCGTGTTCAAGGGTGGCAGGCTGGTGACCATCAGCAGCGATGCCGATCTTTCCCAGGAA
GTCCTGTTGAGTCTTGCCTC

Downstream 100 bases:

>100_bases
ACCGGCATGAACGACTGACTACAACAATAACGAGGTTCTCATCATGAAATTCGGTACATCCCTGGCCGCTGTCGCGGCGT
TCTCCCTGCTCGCCAGCAGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MNAKTIIAPASTSPRSRLRLSLDRFGLPLVFILLCLVLAFASEYFMTWRNWMDILRQTSINGILAVGMTYVILTKGIDLS
VGSILAFAGLCSALVATQGYGLLAAVSAGMFAGAMLGVVNGFMVANLSIPPFVATLGMLSIARGMTFILNDGSPVTDLPE
EYLALGIGRIGPIGVPIIIFAVVALIFWMVLRYTTYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLS
ARTTSALPQAGMSYELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFAVLIDVW
RKKKR

Sequences:

>Translated_325_residues
MNAKTIIAPASTSPRSRLRLSLDRFGLPLVFILLCLVLAFASEYFMTWRNWMDILRQTSINGILAVGMTYVILTKGIDLS
VGSILAFAGLCSALVATQGYGLLAAVSAGMFAGAMLGVVNGFMVANLSIPPFVATLGMLSIARGMTFILNDGSPVTDLPE
EYLALGIGRIGPIGVPIIIFAVVALIFWMVLRYTTYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLS
ARTTSALPQAGMSYELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFAVLIDVW
RKKKR
>Mature_325_residues
MNAKTIIAPASTSPRSRLRLSLDRFGLPLVFILLCLVLAFASEYFMTWRNWMDILRQTSINGILAVGMTYVILTKGIDLS
VGSILAFAGLCSALVATQGYGLLAAVSAGMFAGAMLGVVNGFMVANLSIPPFVATLGMLSIARGMTFILNDGSPVTDLPE
EYLALGIGRIGPIGVPIIIFAVVALIFWMVLRYTTYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLS
ARTTSALPQAGMSYELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFAVLIDVW
RKKKR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=49.1909385113269, Blast_Score=242, Evalue=3e-65,
Organism=Escherichia coli, GI1790524, Length=315, Percent_Identity=40.9523809523809, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1788896, Length=328, Percent_Identity=38.4146341463415, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI145693152, Length=318, Percent_Identity=35.8490566037736, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=32.6975476839237, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI87082395, Length=294, Percent_Identity=36.0544217687075, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI145693214, Length=307, Percent_Identity=34.8534201954397, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788471, Length=323, Percent_Identity=32.1981424148607, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787793, Length=265, Percent_Identity=35.0943396226415, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787794, Length=273, Percent_Identity=29.3040293040293, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34178; Mature: 34178

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKTIIAPASTSPRSRLRLSLDRFGLPLVFILLCLVLAFASEYFMTWRNWMDILRQTSI
CCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NGILAVGMTYVILTKGIDLSVGSILAFAGLCSALVATQGYGLLAAVSAGMFAGAMLGVVN
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GFMVANLSIPPFVATLGMLSIARGMTFILNDGSPVTDLPEEYLALGIGRIGPIGVPIIIF
HHHEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHH
AVVALIFWMVLRYTTYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLS
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARTTSALPQAGMSYELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSS
HHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHH
YYQQVAKGLIIVFAVLIDVWRKKKR
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAKTIIAPASTSPRSRLRLSLDRFGLPLVFILLCLVLAFASEYFMTWRNWMDILRQTSI
CCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NGILAVGMTYVILTKGIDLSVGSILAFAGLCSALVATQGYGLLAAVSAGMFAGAMLGVVN
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GFMVANLSIPPFVATLGMLSIARGMTFILNDGSPVTDLPEEYLALGIGRIGPIGVPIIIF
HHHEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHH
AVVALIFWMVLRYTTYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLS
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARTTSALPQAGMSYELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSS
HHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEHHH
YYQQVAKGLIIVFAVLIDVWRKKKR
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]