Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 66045744

GI number: 66045744

Start: 2916576

End: 2917340

Strand: Direct

Name: yagI [H]

Synonym: Psyr_2508

Alternate gene names: 66045744

Gene position: 2916576-2917340 (Clockwise)

Preceding gene: 66045743

Following gene: 66045745

Centisome position: 47.86

GC content: 60.0

Gene sequence:

>765_bases
ATGACCGAAGACACTATCAAGCGCCGGGCACGTGGACTGGACCGGGCGTTCGATATCCTGGATTTTCTCAAGGAAAAGGC
CAGGCCCATGCGCCCCAATGAGATTGCCAGCGGCATCGGCAGCCCCAAATCGACGGTTTACGAGCTGGTGGCCTCGCTGC
TGGAACGGCGCATTCTGGAGACAGTGGGCAAGGACGGGCATGTCTATCTTGGCCGTCAGTTGTATTTCCTGGGGCAGGCA
CACTTGCGGCACTTCGATTTCACTCGCGAGGCCGAAGCCTGCCTGTGCGAGATCGTCAGCCAGACGCGGGAAACTGCGCA
GATGTGCCTGCTCAATGGTCGCAAATACACCGTGGCACTGATGAAGGAGGGCGAGCGTCATTTCAGGATTTCTTCAGACA
TCGGCGAAAACGCGCCCATTCCATGGACGGCGTCCGGGCGTCTGTTGCTCAGCCACCTGAGCGATCAGCAGATCATCGAC
CTGATCGACCCCGACGACTTCATTCTGCCGGGGGGCGAACGTCTGCCGCTGGAGACCTTTCTTCGGGAAATCCGCAAGGC
CGGCGAGGAGGGCTTCTTTTCTTTCGACAGCGTGGCTGACACCTTCACCCACTGCTTCGCCGCCCCCGTGAACAACGAAC
ACGGTCAGTGCATCGCCACGCTGTGCATCGTCGCGCCGCGTGCCGACGCCAAGACCCACTACGACGACTATCGGCGGGTG
CTGATCGACAGTGCCAATGGCCTGGCTCGCCGTATCAATGAATAA

Upstream 100 bases:

>100_bases
GCCTACAAGCGCAAATAGCACACGTGCAGCCACACGTTGCAAGCCAGAAGCCCGATCACTTGAGGCTTTTGGCTCGCCGC
TTTCCCAAGGAATGAACCTC

Downstream 100 bases:

>100_bases
CCGCAGGAGATTACCGATGAGCACCGCCGTAATGGACAAGGGTACTGCGCAGCCGGGTGACAGCCTGGTCAGTGATGTCA
GCCTGCCCGCACTGGTGATT

Product: regulatory proteins, IclR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTEDTIKRRARGLDRAFDILDFLKEKARPMRPNEIASGIGSPKSTVYELVASLLERRILETVGKDGHVYLGRQLYFLGQA
HLRHFDFTREAEACLCEIVSQTRETAQMCLLNGRKYTVALMKEGERHFRISSDIGENAPIPWTASGRLLLSHLSDQQIID
LIDPDDFILPGGERLPLETFLREIRKAGEEGFFSFDSVADTFTHCFAAPVNNEHGQCIATLCIVAPRADAKTHYDDYRRV
LIDSANGLARRINE

Sequences:

>Translated_254_residues
MTEDTIKRRARGLDRAFDILDFLKEKARPMRPNEIASGIGSPKSTVYELVASLLERRILETVGKDGHVYLGRQLYFLGQA
HLRHFDFTREAEACLCEIVSQTRETAQMCLLNGRKYTVALMKEGERHFRISSDIGENAPIPWTASGRLLLSHLSDQQIID
LIDPDDFILPGGERLPLETFLREIRKAGEEGFFSFDSVADTFTHCFAAPVNNEHGQCIATLCIVAPRADAKTHYDDYRRV
LIDSANGLARRINE
>Mature_253_residues
TEDTIKRRARGLDRAFDILDFLKEKARPMRPNEIASGIGSPKSTVYELVASLLERRILETVGKDGHVYLGRQLYFLGQAH
LRHFDFTREAEACLCEIVSQTRETAQMCLLNGRKYTVALMKEGERHFRISSDIGENAPIPWTASGRLLLSHLSDQQIIDL
IDPDDFILPGGERLPLETFLREIRKAGEEGFFSFDSVADTFTHCFAAPVNNEHGQCIATLCIVAPRADAKTHYDDYRRVL
IDSANGLARRINE

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=214, Percent_Identity=24.2990654205607, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082359, Length=221, Percent_Identity=21.7194570135747, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28725; Mature: 28594

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEDTIKRRARGLDRAFDILDFLKEKARPMRPNEIASGIGSPKSTVYELVASLLERRILE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TVGKDGHVYLGRQLYFLGQAHLRHFDFTREAEACLCEIVSQTRETAQMCLLNGRKYTVAL
HHCCCCCEEECHHHEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
MKEGERHFRISSDIGENAPIPWTASGRLLLSHLSDQQIIDLIDPDDFILPGGERLPLETF
ECCCCHHEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCEECCCCCCCCHHHH
LREIRKAGEEGFFSFDSVADTFTHCFAAPVNNEHGQCIATLCIVAPRADAKTHYDDYRRV
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
LIDSANGLARRINE
HHHCCCHHHHHCCC
>Mature Secondary Structure 
TEDTIKRRARGLDRAFDILDFLKEKARPMRPNEIASGIGSPKSTVYELVASLLERRILE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TVGKDGHVYLGRQLYFLGQAHLRHFDFTREAEACLCEIVSQTRETAQMCLLNGRKYTVAL
HHCCCCCEEECHHHEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
MKEGERHFRISSDIGENAPIPWTASGRLLLSHLSDQQIIDLIDPDDFILPGGERLPLETF
ECCCCHHEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCEECCCCCCCCHHHH
LREIRKAGEEGFFSFDSVADTFTHCFAAPVNNEHGQCIATLCIVAPRADAKTHYDDYRRV
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
LIDSANGLARRINE
HHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]