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The map label for this gene is yjgF [C]

Identifier: 66045743

GI number: 66045743

Start: 2916083

End: 2916493

Strand: Direct

Name: yjgF [C]

Synonym: Psyr_2507

Alternate gene names: 66045743

Gene position: 2916083-2916493 (Clockwise)

Preceding gene: 66045742

Following gene: 66045744

Centisome position: 47.85

GC content: 58.88

Gene sequence:

>411_bases
ATGCTTCAAGACAAGGAAAAACTCATGACTATTACCCGTTATGGCGCAGGCAGCACAGCAGGGGGCGGCCAGCCACGTCC
ATTCGCTCGCGCAGTCGAGGCTGACGGCTGGTTGCACGTTTCCGGCCAGGTACCTGCGCAGGATGGCGAGATCATCGTCG
GCGGCATCGTCGAGCAGACGCATCAGACCATGCGCAACCTGATCGCAATTCTTGAAGAGGCCGGTTATGCGCTCAAGGAT
GTGATCCGGGTCGGCGTGTGGCTGGAGGACCCGCGGGACTTCTGGAGTTTCAACAAGGTGTTCGGTGAGTACTTCACCCC
CGAGCATGCGCCGGCACGCGCTTGCGTTCAGGCGAGCATGATGGTCGACTGCAAGGTCGAAATCGACTGTATTGCCTACA
AGCGCAAATAG

Upstream 100 bases:

>100_bases
GAAGAGCAGGGGCCACCCAAGGTTTTGTTCGAGCAGCCGAAGTCGGCGCGCTTGAGCGAGTTTCTCAAGAACATCCGTTT
TTAAACGTTCACCACGTCCA

Downstream 100 bases:

>100_bases
CACACGTGCAGCCACACGTTGCAAGCCAGAAGCCCGATCACTTGAGGCTTTTGGCTCGCCGCTTTCCCAAGGAATGAACC
TCATGACCGAAGACACTATC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MLQDKEKLMTITRYGAGSTAGGGQPRPFARAVEADGWLHVSGQVPAQDGEIIVGGIVEQTHQTMRNLIAILEEAGYALKD
VIRVGVWLEDPRDFWSFNKVFGEYFTPEHAPARACVQASMMVDCKVEIDCIAYKRK

Sequences:

>Translated_136_residues
MLQDKEKLMTITRYGAGSTAGGGQPRPFARAVEADGWLHVSGQVPAQDGEIIVGGIVEQTHQTMRNLIAILEEAGYALKD
VIRVGVWLEDPRDFWSFNKVFGEYFTPEHAPARACVQASMMVDCKVEIDCIAYKRK
>Mature_136_residues
MLQDKEKLMTITRYGAGSTAGGGQPRPFARAVEADGWLHVSGQVPAQDGEIIVGGIVEQTHQTMRNLIAILEEAGYALKD
VIRVGVWLEDPRDFWSFNKVFGEYFTPEHAPARACVQASMMVDCKVEIDCIAYKRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=109, Percent_Identity=32.1100917431193, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87082396, Length=114, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=33.6283185840708, Blast_Score=67, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=34.4, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=34.4, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=34.4, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=111, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=31.1320754716981, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19921376, Length=119, Percent_Identity=36.9747899159664, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15100; Mature: 15100

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQDKEKLMTITRYGAGSTAGGGQPRPFARAVEADGWLHVSGQVPAQDGEIIVGGIVEQT
CCCCHHHHEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEEHHHHHHH
HQTMRNLIAILEEAGYALKDVIRVGVWLEDPRDFWSFNKVFGEYFTPEHAPARACVQASM
HHHHHHHHHHHHHCCHHHHHHHHHCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MVDCKVEIDCIAYKRK
EEEEEEEEEEEEEECC
>Mature Secondary Structure
MLQDKEKLMTITRYGAGSTAGGGQPRPFARAVEADGWLHVSGQVPAQDGEIIVGGIVEQT
CCCCHHHHEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCEEEHHHHHHH
HQTMRNLIAILEEAGYALKDVIRVGVWLEDPRDFWSFNKVFGEYFTPEHAPARACVQASM
HHHHHHHHHHHHHCCHHHHHHHHHCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MVDCKVEIDCIAYKRK
EEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]