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The map label for this gene is rfaZ [H]

Identifier: 66045732

GI number: 66045732

Start: 2907437

End: 2908273

Strand: Reverse

Name: rfaZ [H]

Synonym: Psyr_2496

Alternate gene names: 66045732

Gene position: 2908273-2907437 (Counterclockwise)

Preceding gene: 66045748

Following gene: 66045731

Centisome position: 47.73

GC content: 52.33

Gene sequence:

>837_bases
ATGACTAGTCAATCAATTAATTCGACGCGCTACGTACGCAATGCTGTTGACGAGCACACGCCTGCACCGACGCGTGTGCT
TGATTTCAGCCAATGCAAAGGCATTAAGAAAGGGCCGGTCTTCCTGATTGGCTCTGGGAAATCAGCAAAGGATTTCCCGA
TCCAAGAGTTCTCGCACATCCCCATGATTACCATGAACGGCGCGTTCTCGATGTTCGCAGGCACGAGCATAAAACCGTTG
TTCTACGTCTGCTCCGACAGGGATTTCCCCAACCAGCAGCCTGAGCTGTTCGCCGCTGCCATGCGCTCCAGCGAGAATGT
AGGCCTCTGGGAAGATCAATTTCGCGGCGACATTCCCAGACCTTCCGGATGCGCTTATGCACTGAAGAAATCGCCCAGAT
TGTCGACGGTGGCGGCACTGTGCTCGCGAGAGGACGCACTGGTCAGAAAACTCTCGTTATGGAGTAGCAGAAGCCGGGAT
ATCGGTTTCAGCAAGGACCTGGAACTTGGTTTTTTCGACGCCCGAACTGTCATGTATCTGGCGCTGCAACTGTCTTATCA
CCTTGGTTTCGACAACGTCTTTCTGGTCGGCTTCGATATGAATCAGTCCGTAGGCCGATTCTATGAATCACCCAGCGACA
ATTGCTCACCCTGTGGTCTGGACCAGCATTACGAATCAAGAATTCTTCCTTCGCTGGAACTGATGTCGAAACAGGTCGTC
GGGAGCGACTTCCAGGTATTCAATGTCTCCGAGAACTCGCGAGTGCCGCATGAGGTGATTCCCAAGTTGAGCCTTGATGA
AGTTCGCCATAAAGTCAGCTGCGCACTTCAACAATAG

Upstream 100 bases:

>100_bases
CTCTTTTGAAACCCTTTGATGTTGAGTTACTGGCCACCAGCCGATAATGTTGCGCGTAAAACGCCCTAACTAATTTGCCA
CTAGTGCTTACAAGGTTGTC

Downstream 100 bases:

>100_bases
TATTTCGCCATCACAGAGTGCTGTCGGCAACGCAGCCTGCTTTTCTTAAGGCATGCGCAATTGCCCGCAACGAAGGTCGC
TGAAACAGGCGCCAGCCCTG

Product: lipopolysaccharide core biosynthesis domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTSQSINSTRYVRNAVDEHTPAPTRVLDFSQCKGIKKGPVFLIGSGKSAKDFPIQEFSHIPMITMNGAFSMFAGTSIKPL
FYVCSDRDFPNQQPELFAAAMRSSENVGLWEDQFRGDIPRPSGCAYALKKSPRLSTVAALCSREDALVRKLSLWSSRSRD
IGFSKDLELGFFDARTVMYLALQLSYHLGFDNVFLVGFDMNQSVGRFYESPSDNCSPCGLDQHYESRILPSLELMSKQVV
GSDFQVFNVSENSRVPHEVIPKLSLDEVRHKVSCALQQ

Sequences:

>Translated_278_residues
MTSQSINSTRYVRNAVDEHTPAPTRVLDFSQCKGIKKGPVFLIGSGKSAKDFPIQEFSHIPMITMNGAFSMFAGTSIKPL
FYVCSDRDFPNQQPELFAAAMRSSENVGLWEDQFRGDIPRPSGCAYALKKSPRLSTVAALCSREDALVRKLSLWSSRSRD
IGFSKDLELGFFDARTVMYLALQLSYHLGFDNVFLVGFDMNQSVGRFYESPSDNCSPCGLDQHYESRILPSLELMSKQVV
GSDFQVFNVSENSRVPHEVIPKLSLDEVRHKVSCALQQ
>Mature_277_residues
TSQSINSTRYVRNAVDEHTPAPTRVLDFSQCKGIKKGPVFLIGSGKSAKDFPIQEFSHIPMITMNGAFSMFAGTSIKPLF
YVCSDRDFPNQQPELFAAAMRSSENVGLWEDQFRGDIPRPSGCAYALKKSPRLSTVAALCSREDALVRKLSLWSSRSRDI
GFSKDLELGFFDARTVMYLALQLSYHLGFDNVFLVGFDMNQSVGRFYESPSDNCSPCGLDQHYESRILPSLELMSKQVVG
SDFQVFNVSENSRVPHEVIPKLSLDEVRHKVSCALQQ

Specific function: Not Known. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790054, Length=240, Percent_Identity=23.75, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009251 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31117; Mature: 30986

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQSINSTRYVRNAVDEHTPAPTRVLDFSQCKGIKKGPVFLIGSGKSAKDFPIQEFSHI
CCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCC
PMITMNGAFSMFAGTSIKPLFYVCSDRDFPNQQPELFAAAMRSSENVGLWEDQFRGDIPR
CEEEECCCCHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCC
PSGCAYALKKSPRLSTVAALCSREDALVRKLSLWSSRSRDIGFSKDLELGFFDARTVMYL
CCCCEEHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHH
ALQLSYHLGFDNVFLVGFDMNQSVGRFYESPSDNCSPCGLDQHYESRILPSLELMSKQVV
HHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHC
GSDFQVFNVSENSRVPHEVIPKLSLDEVRHKVSCALQQ
CCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSQSINSTRYVRNAVDEHTPAPTRVLDFSQCKGIKKGPVFLIGSGKSAKDFPIQEFSHI
CCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCC
PMITMNGAFSMFAGTSIKPLFYVCSDRDFPNQQPELFAAAMRSSENVGLWEDQFRGDIPR
CEEEECCCCHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCC
PSGCAYALKKSPRLSTVAALCSREDALVRKLSLWSSRSRDIGFSKDLELGFFDARTVMYL
CCCCEEHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHH
ALQLSYHLGFDNVFLVGFDMNQSVGRFYESPSDNCSPCGLDQHYESRILPSLELMSKQVV
HHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHC
GSDFQVFNVSENSRVPHEVIPKLSLDEVRHKVSCALQQ
CCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1657881; 11677609 [H]