Click here to switch to the map view.

The map label for this gene is ytfM [H]

Identifier: 66045714

GI number: 66045714

Start: 2872283

End: 2874007

Strand: Direct

Name: ytfM [H]

Synonym: Psyr_2478

Alternate gene names: 66045714

Gene position: 2872283-2874007 (Clockwise)

Preceding gene: 66045713

Following gene: 66045715

Centisome position: 47.14

GC content: 60.12

Gene sequence:

>1725_bases
ATGAAGCTTTTCAGACTATTCAGCAGCGTTTTCCTGATGACCATGAGTGCGGCCGCGCTTGCCCAGGCCCGCCTCGACGT
CAGGATCAAGCCTGCCAATCCGCAACTCAAGGCCAACGTCGAAGGGTATGTCGGTGATCTGGGCGAGCGTGATGCCCAGG
CATTGCGCAACTTCAGCCTCGGTGCCGAGCAGCAGGCGGAAAAAGCCGCGCAGGCGCTGGGTTATTACCAGGCGCAGATT
GATAGTGAGATCAAGGACGGAGATCAACCGAGCCTGGTGATCAACATCCAGCCGGGCGAACCCATTCACCTGCGTAACGT
GGTGATCCGGGTCGAAGGCCCGGCGGCAGCAATGAAGGCCTTTCGTGTGCCGAGCAGCGACGCGCTGAAAACCGGCGCGG
TGTTGAATCACGGCAATTATGAAGACGCCAAGCGTCTGATCCAGAATCAGGCTTCGCGTTACGGATTTTTCAGCGGTCAC
TTCACCCGTCAGCGCCTGGCCATCGACCCGCGGGCCGGTGTGGCGGATATCGAGCTGGTCTATGAAAGCGGGCCGCGCTA
CACGCTCGGCAAGGTCATGTTCAGTGGCGACGCGCCATTTGATGACGATCTGCTCAAGCGCATGGTGCCGTTCAAGGAAA
ACACGCCTTACGACTCCCAACTGATCGCCGAACTGACCCAGGCCATGCAGGGCAGCGGTTACTTCGAGGGCGTACGGGTC
GATGCGGCGCCCACCGCAGCGGAAAATCAGGTTATTCCGGTGACCGTTCAGCTCGAAACCCGCAAGCCTCGCACCATGGG
GTTGGGGCTGGGCTATTCGACTGACGTTGGCCCGCGTGGCAAAGCCAACTGGACCCGGCATTGGGCCAATCCGCAGGGCC
ACAGTTATGGTTTCGAATCCGAGATTTCCGCGCCACGGCAGAATATCGGCCTGTGGTACGACGTACCGCTCGACCCGCCG
CTGACCGACAAATTGCGCTACGCCGGTGGGTATCAGTATGAAGAGATCGCCGGAACCGACAGCCTCAGCAAATTGCTGAC
TGCCGGGCCTGAATGGCACAGCAAGCTGCCCAGCGGCTGGGAGCGGGTCATATCCCTGAAATGGCAGCGTGAAGAATACC
GCCTGGGCGATGACGCCGGCCTCAGCACGCTGCTGATGCCCGGTATCAGTTACTCGTACCTGCGCAGTGACAACCGTATC
GACCCGCACCAGGGTTACAGACTGCAGTTCGACACGCAGGTGGCCAAGGAGGGCATGTTGTCTGACGCCAATCTGGTGCA
TGCCAACGTGCTGCTCAAAGGGCTGACGACCGTCGCGCAAAATCACCGCTTTCTCGGTCGCGTGCAGTTTGGCGGCAACC
TCACCGACGGTTACACCTCGATACCGCCCTCGCTGCGCTTTTTTGCCGGTGGCGATCAGAGCGTGCGCGGCTATGACTAT
CAGAAGTTGTCACCGACCAATTCCGACGGCGACCGCATCGGTGGGCGATACATGTTTGCCGGTAGCGTCGAATACCAATA
TTCCATCGCTGACAAATGGCGCCTGGCGACCTTCATCGATCAGGGCAACTCGTTCAACAGCCTGGACAAGCCAGACCTGA
AAACCGGAGTCGGTTTCGGCGTGCGCTGGGTATCCCCAGTAGGCCCGCTGCGTCTCGATCTGGCCCACGCGCTGGACGAT
GACGGCGGAATCCGTCTGCACTTTTCGATGGGGCCGGAGCTTTGA

Upstream 100 bases:

>100_bases
ACCCTCAGGTGTCACTGCCGGTCCCTGACGTAATGGCCTGAATATCCTGCAATTCGTGGGCTTCCAGTGCAGCCTGTCGA
TCGTGGTAGCATCTACGCCC

Downstream 100 bases:

>100_bases
ACAAGGTGAATATCACCCGCGGCGCCAAGGTCGTCGGGCTGGGACTCGTCGCATTACTGCTGCTGGTGATCATCAGTGTC
GCGCTGCTGCTGGGCACCCA

Product: surface antigen (D15):surface antigen variable number

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MKLFRLFSSVFLMTMSAAALAQARLDVRIKPANPQLKANVEGYVGDLGERDAQALRNFSLGAEQQAEKAAQALGYYQAQI
DSEIKDGDQPSLVINIQPGEPIHLRNVVIRVEGPAAAMKAFRVPSSDALKTGAVLNHGNYEDAKRLIQNQASRYGFFSGH
FTRQRLAIDPRAGVADIELVYESGPRYTLGKVMFSGDAPFDDDLLKRMVPFKENTPYDSQLIAELTQAMQGSGYFEGVRV
DAAPTAAENQVIPVTVQLETRKPRTMGLGLGYSTDVGPRGKANWTRHWANPQGHSYGFESEISAPRQNIGLWYDVPLDPP
LTDKLRYAGGYQYEEIAGTDSLSKLLTAGPEWHSKLPSGWERVISLKWQREEYRLGDDAGLSTLLMPGISYSYLRSDNRI
DPHQGYRLQFDTQVAKEGMLSDANLVHANVLLKGLTTVAQNHRFLGRVQFGGNLTDGYTSIPPSLRFFAGGDQSVRGYDY
QKLSPTNSDGDRIGGRYMFAGSVEYQYSIADKWRLATFIDQGNSFNSLDKPDLKTGVGFGVRWVSPVGPLRLDLAHALDD
DGGIRLHFSMGPEL

Sequences:

>Translated_574_residues
MKLFRLFSSVFLMTMSAAALAQARLDVRIKPANPQLKANVEGYVGDLGERDAQALRNFSLGAEQQAEKAAQALGYYQAQI
DSEIKDGDQPSLVINIQPGEPIHLRNVVIRVEGPAAAMKAFRVPSSDALKTGAVLNHGNYEDAKRLIQNQASRYGFFSGH
FTRQRLAIDPRAGVADIELVYESGPRYTLGKVMFSGDAPFDDDLLKRMVPFKENTPYDSQLIAELTQAMQGSGYFEGVRV
DAAPTAAENQVIPVTVQLETRKPRTMGLGLGYSTDVGPRGKANWTRHWANPQGHSYGFESEISAPRQNIGLWYDVPLDPP
LTDKLRYAGGYQYEEIAGTDSLSKLLTAGPEWHSKLPSGWERVISLKWQREEYRLGDDAGLSTLLMPGISYSYLRSDNRI
DPHQGYRLQFDTQVAKEGMLSDANLVHANVLLKGLTTVAQNHRFLGRVQFGGNLTDGYTSIPPSLRFFAGGDQSVRGYDY
QKLSPTNSDGDRIGGRYMFAGSVEYQYSIADKWRLATFIDQGNSFNSLDKPDLKTGVGFGVRWVSPVGPLRLDLAHALDD
DGGIRLHFSMGPEL
>Mature_574_residues
MKLFRLFSSVFLMTMSAAALAQARLDVRIKPANPQLKANVEGYVGDLGERDAQALRNFSLGAEQQAEKAAQALGYYQAQI
DSEIKDGDQPSLVINIQPGEPIHLRNVVIRVEGPAAAMKAFRVPSSDALKTGAVLNHGNYEDAKRLIQNQASRYGFFSGH
FTRQRLAIDPRAGVADIELVYESGPRYTLGKVMFSGDAPFDDDLLKRMVPFKENTPYDSQLIAELTQAMQGSGYFEGVRV
DAAPTAAENQVIPVTVQLETRKPRTMGLGLGYSTDVGPRGKANWTRHWANPQGHSYGFESEISAPRQNIGLWYDVPLDPP
LTDKLRYAGGYQYEEIAGTDSLSKLLTAGPEWHSKLPSGWERVISLKWQREEYRLGDDAGLSTLLMPGISYSYLRSDNRI
DPHQGYRLQFDTQVAKEGMLSDANLVHANVLLKGLTTVAQNHRFLGRVQFGGNLTDGYTSIPPSLRFFAGGDQSVRGYDY
QKLSPTNSDGDRIGGRYMFAGSVEYQYSIADKWRLATFIDQGNSFNSLDKPDLKTGVGFGVRWVSPVGPLRLDLAHALDD
DGGIRLHFSMGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=584, Percent_Identity=34.0753424657534, Blast_Score=329, Evalue=3e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 63441; Mature: 63441

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFRLFSSVFLMTMSAAALAQARLDVRIKPANPQLKANVEGYVGDLGERDAQALRNFSL
CHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEECCCHHHCCCCHHHHHHHHHCCC
GAEQQAEKAAQALGYYQAQIDSEIKDGDQPSLVINIQPGEPIHLRNVVIRVEGPAAAMKA
CCHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCEEEEEEEEEECCCHHHHHH
FRVPSSDALKTGAVLNHGNYEDAKRLIQNQASRYGFFSGHFTRQRLAIDPRAGVADIELV
HCCCCCCCHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEE
YESGPRYTLGKVMFSGDAPFDDDLLKRMVPFKENTPYDSQLIAELTQAMQGSGYFEGVRV
ECCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
DAAPTAAENQVIPVTVQLETRKPRTMGLGLGYSTDVGPRGKANWTRHWANPQGHSYGFES
CCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EISAPRQNIGLWYDVPLDPPLTDKLRYAGGYQYEEIAGTDSLSKLLTAGPEWHSKLPSGW
CCCCCHHHCCEEEECCCCCCHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCHHHHHCCCCH
ERVISLKWQREEYRLGDDAGLSTLLMPGISYSYLRSDNRIDPHQGYRLQFDTQVAKEGML
HHHEEEEEEHHHHCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCEEEECHHHHHCCCC
SDANLVHANVLLKGLTTVAQNHRFLGRVQFGGNLTDGYTSIPPSLRFFAGGDQSVRGYDY
CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC
QKLSPTNSDGDRIGGRYMFAGSVEYQYSIADKWRLATFIDQGNSFNSLDKPDLKTGVGFG
EECCCCCCCCCCCCCEEEEECCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCHHCCCCC
VRWVSPVGPLRLDLAHALDDDGGIRLHFSMGPEL
EEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MKLFRLFSSVFLMTMSAAALAQARLDVRIKPANPQLKANVEGYVGDLGERDAQALRNFSL
CHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEECCCHHHCCCCHHHHHHHHHCCC
GAEQQAEKAAQALGYYQAQIDSEIKDGDQPSLVINIQPGEPIHLRNVVIRVEGPAAAMKA
CCHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCCCEEEEEEEEEECCCHHHHHH
FRVPSSDALKTGAVLNHGNYEDAKRLIQNQASRYGFFSGHFTRQRLAIDPRAGVADIELV
HCCCCCCCHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEE
YESGPRYTLGKVMFSGDAPFDDDLLKRMVPFKENTPYDSQLIAELTQAMQGSGYFEGVRV
ECCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
DAAPTAAENQVIPVTVQLETRKPRTMGLGLGYSTDVGPRGKANWTRHWANPQGHSYGFES
CCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EISAPRQNIGLWYDVPLDPPLTDKLRYAGGYQYEEIAGTDSLSKLLTAGPEWHSKLPSGW
CCCCCHHHCCEEEECCCCCCHHHHHHHCCCCCHHHHCCCHHHHHHHHCCCHHHHHCCCCH
ERVISLKWQREEYRLGDDAGLSTLLMPGISYSYLRSDNRIDPHQGYRLQFDTQVAKEGML
HHHEEEEEEHHHHCCCCCCCCHHHHHCCCCHHHHCCCCCCCCCCCCEEEECHHHHHCCCC
SDANLVHANVLLKGLTTVAQNHRFLGRVQFGGNLTDGYTSIPPSLRFFAGGDQSVRGYDY
CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC
QKLSPTNSDGDRIGGRYMFAGSVEYQYSIADKWRLATFIDQGNSFNSLDKPDLKTGVGFG
EECCCCCCCCCCCCCEEEEECCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCHHCCCCC
VRWVSPVGPLRLDLAHALDDDGGIRLHFSMGPEL
EEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]