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The map label for this gene is yhjC [H]

Identifier: 66045593

GI number: 66045593

Start: 2733823

End: 2734728

Strand: Reverse

Name: yhjC [H]

Synonym: Psyr_2357

Alternate gene names: 66045593

Gene position: 2734728-2733823 (Counterclockwise)

Preceding gene: 66045596

Following gene: 66045591

Centisome position: 44.88

GC content: 60.6

Gene sequence:

>906_bases
ATGGATTTGTTTCAGGCAATGCGCGTGTACGTGAAAGTGGTCGAGGCAGGCAGCCTGACGGCAGCGGCGCAAGCGTGTTC
GATTTCCACCACCATGGTCGGCAATCACTTGCGCGCACTGGAAGAGCGCTTGGGCGTCAGCCTCTTGCAGCGCACCACAC
GCCGTCAGCGATTGACGGAATTCGGTACCGCGTATTACGAGCGTTGCCTGGAAGTATTGGGGCTGGTGGCCGAGTCCGAG
CAACTGGCCGAGCAGGCTCATGGCGATCCCACAGGTACGCTGCGCATCACCGCACCACTGACATTCGGTTCGGAAGTGCT
GGCGCCTGCGCTGGTCGAATTCTCGCGGCGTTTTCCCGAAGTCAGGCTCGACCTTGTACTGACCAATCAACGTCTGGACA
TGATCGACAATGGTTTTGACGTCGCCATTCGCTTGGGCAACATTCCAGAATCGTCGCCACTGATCGCCCGTCCCCTGCAG
GATTACACCTTGACCATCTGCGCCGCGCCGGACTATCTCGCCCGCCACGGCACGCCGACCCATCCCGAGGATCTTCGTGA
GCATAATTGCCTGGCGTTCGCCTACCCGGCGGGAGACGAATGGCGGACTGCCGGTACACAATGGCGTATGACCGGCGCAG
ACGGCGACGTGCTGGTGGAGGTAAGCGGTTCGATGGTGGCCAACACTTCCGCCGGTCTTTATCAGGCGGCTCGTGCAGGC
ATGGGCGTCGTGATGCTTCCGGATGCACTGGTACAGCGCGACCTGCAGGAAGGCCGGCTGTTTGCGTTGTTCCCGGACTA
CCATTTGCCCCGACGACCGATGAACCTGCTGTATGTGCAGGACCGTTATCGACTGCCCAAGCTGAGAAGTTTTGTGGAGT
ACGCGACGGGGCTTTGGGGGCGGTAA

Upstream 100 bases:

>100_bases
GTGAAGTTCCTTGGGTATGTTTCGGTTTTTGCAGTATCGTTAACCACCTCAAATGGATAAACAGCGAAATACTTCAATCA
TTTTAAAGCCAGGATTGATA

Downstream 100 bases:

>100_bases
GGACTTACCGCCGGAGGGTCACCGGGTCGCCCCCTGCGCGCGGCCTTTGCGGTGCGCGCCGGGGTTTACCGGGAATGAAC
GTCAGACCCGGAATCGACTG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDLFQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGTAYYERCLEVLGLVAESE
QLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVRLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQ
DYTLTICAAPDYLARHGTPTHPEDLREHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAG
MGVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEYATGLWGR

Sequences:

>Translated_301_residues
MDLFQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGTAYYERCLEVLGLVAESE
QLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVRLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQ
DYTLTICAAPDYLARHGTPTHPEDLREHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAG
MGVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEYATGLWGR
>Mature_301_residues
MDLFQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTEFGTAYYERCLEVLGLVAESE
QLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPEVRLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQ
DYTLTICAAPDYLARHGTPTHPEDLREHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAG
MGVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEYATGLWGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=304, Percent_Identity=33.8815789473684, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=34.7079037800687, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=32.1678321678322, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=29.8305084745763, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=29, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787589, Length=273, Percent_Identity=31.1355311355311, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789173, Length=291, Percent_Identity=24.0549828178694, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788706, Length=293, Percent_Identity=24.5733788395904, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790011, Length=269, Percent_Identity=23.7918215613383, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=26.5993265993266, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=183, Percent_Identity=34.4262295081967, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790262, Length=265, Percent_Identity=26.7924528301887, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790399, Length=281, Percent_Identity=25.9786476868327, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33487; Mature: 33487

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGTAYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
VRLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPT
EEEEEEEECCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCC
HPEDLREHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAG
CHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCEEECCCHHHHHHHHHC
MGVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEYATGLWG
CCEEECCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
R
C
>Mature Secondary Structure
MDLFQAMRVYVKVVEAGSLTAAAQACSISTTMVGNHLRALEERLGVSLLQRTTRRQRLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGTAYYERCLEVLGLVAESEQLAEQAHGDPTGTLRITAPLTFGSEVLAPALVEFSRRFPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
VRLDLVLTNQRLDMIDNGFDVAIRLGNIPESSPLIARPLQDYTLTICAAPDYLARHGTPT
EEEEEEEECCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCC
HPEDLREHNCLAFAYPAGDEWRTAGTQWRMTGADGDVLVEVSGSMVANTSAGLYQAARAG
CHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCEEECCCHHHHHHHHHC
MGVVMLPDALVQRDLQEGRLFALFPDYHLPRRPMNLLYVQDRYRLPKLRSFVEYATGLWG
CCEEECCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]