| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yyaJ [H]
Identifier: 66045544
GI number: 66045544
Start: 2678583
End: 2680001
Strand: Reverse
Name: yyaJ [H]
Synonym: Psyr_2304
Alternate gene names: 66045544
Gene position: 2680001-2678583 (Counterclockwise)
Preceding gene: 66045547
Following gene: 66045543
Centisome position: 43.98
GC content: 60.39
Gene sequence:
>1419_bases ATGACCTCATTACCCCATGCCGAGGCAGCCGCGAACGAGCCGTTGCGGGCAGCGTACATCTCGGCGCGTATTGACCGACT GCCTGCGGTCGCGACCATCTGGCGACTGGTCGCCCTGCTGTCCATCGCCGGCTTTTTCGAGCTCTACGACCTGTTCCAGA CCGCCTACATCAGTCCCGGCCTGATTCGCGACGGGATCTTCGCCACCGGCAGTCAGGGTCTGTTCGGCTTTTCCGATCAG GCAGCCTTTGCTTCGGCAACCTTTCTGGGACTGTTTTTCGGAGCCAGCCTCGTCAGCCCGATTGCCGATCGTTACGGACG CCGCGCGATCTTCACCTTCGCGCTGATCTGGTACACCGTTGCCACCGTGATCATGGGCCTGCAGACCTCTGCGCTGGGCG TGATAGGCATGCGCTTCGTCGTGGGTATCGGCCTGGGGGTCGAGTTGGTCACCATCGACACCTACCTGTCGGAACTGGTG CCCAAGCGCATACGCAGTTCGGCGTTCGCCTTTGCCTTCTTCATTCAGTTTCTGTCAGTGCCCAGCGTCGCGCTGATGTC ATGGTGGCTGGTGCCCCAGGACCCTTTCGGTTTTTCCGGCTGGCGCTGGGTAGTGATCAGCAGTGCAGTCTTCGCCCTGT TCGTCTGGTGGCTGCGCTCGGCGCTGCCGGAATCGCCGCGCTGGCTGGCACAGAAGGGACGCTTCGATGAAGCCGAGCGC ATCATGGACGGCATTGAAGCACGCTGTATCAGAGACCACGGCAAGCCCTTGGATGAGCCTGAACCGGAAAACGTAGCGCT GTCAGGCAACGGTCGATTTGCCGACATGTGGCAGCCACCCTATCGTCGCCGCGCCTTGATGCTGATCGTGTTTCACGTTT TTCAGGCCATCGGTTTCTTTGGCTTCGGCAACTGGCTGCCTGCCCTGCTCTCGGGTCAGGGCCTGAGCGTCACCCACAGC CTGGCCTATGCGTTCGTGATTACGCTGGCTTATCCGCTGGGGCCGTTACTGTTCGTGAAGTTTGCCAACCGCTTCGAGAA CAAATGGCAAATCGTCGGCTCAGCATTGGGCGCGATGATCTTCGGCAGCCTGTTCGCCTTTCAGACCAGCGCGGCAGGAC TGATTTTCTGCGGGATCATGATCACGTTCTGCAACGCATGGCTGAGCTTCAGCTACCACTCGTATCAGGGTGAGCTGTTC CCGACCAACATCCGCGCTCGCGCAGTGGGCTTCTGTTACTCGTTCAGCCGACTGTCAACGGTGTTCAGCAGCCTGCTGAT CGGGATATTTCTCGACCACTTCGGCACGCCGGGCGTACTGGCCTTCATCGTCGGCAGCATGTTGATCGTGATCGTCACCA TCGGCCGGTTCGGGCCACGCACACGCAATCTTGCGCTGGAGCAGATCGCTCACCGCTGA
Upstream 100 bases:
>100_bases TTTTCATCTTTTATACCCCGATAACTGCATTAAAAGACCAATGATTACAAATTGTAAGGAGTAGTATTCAGGCCTTAACA AGAACTCAGGATGGCCATCC
Downstream 100 bases:
>100_bases CGAGTGCAGGTTGAGTGGGCTCAGGCCTGAGCCCACTCAACATTGGTGACACCGAAGTGCTCGGCGTACGGTTTCGACAC CCGCGCGACCTTCTCCAAAC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MTSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPGLIRDGIFATGSQGLFGFSDQ AAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTVATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELV PKRIRSSAFAFAFFIQFLSVPSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAER IMDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFFGFGNWLPALLSGQGLSVTHS LAYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELF PTNIRARAVGFCYSFSRLSTVFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR
Sequences:
>Translated_472_residues MTSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPGLIRDGIFATGSQGLFGFSDQ AAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTVATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELV PKRIRSSAFAFAFFIQFLSVPSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAER IMDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFFGFGNWLPALLSGQGLSVTHS LAYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELF PTNIRARAVGFCYSFSRLSTVFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR >Mature_471_residues TSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPGLIRDGIFATGSQGLFGFSDQA AFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTVATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELVP KRIRSSAFAFAFFIQFLSVPSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAERI MDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFFGFGNWLPALLSGQGLSVTHSL AYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELFP TNIRARAVGFCYSFSRLSTVFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI166064021, Length=404, Percent_Identity=25.990099009901, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI7662270, Length=342, Percent_Identity=21.3450292397661, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI216548223, Length=294, Percent_Identity=21.0884353741497, Blast_Score=69, Evalue=7e-12, Organism=Escherichia coli, GI1788074, Length=439, Percent_Identity=26.879271070615, Blast_Score=135, Evalue=6e-33, Organism=Escherichia coli, GI1786229, Length=410, Percent_Identity=28.2926829268293, Blast_Score=134, Evalue=9e-33, Organism=Escherichia coli, GI1788068, Length=461, Percent_Identity=25.8134490238612, Blast_Score=126, Evalue=4e-30, Organism=Escherichia coli, GI87082159, Length=356, Percent_Identity=28.3707865168539, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1790463, Length=496, Percent_Identity=21.9758064516129, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI87082404, Length=372, Percent_Identity=23.9247311827957, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789207, Length=416, Percent_Identity=24.5192307692308, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI87082231, Length=179, Percent_Identity=27.3743016759777, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320595, Length=155, Percent_Identity=30.3225806451613, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI19922616, Length=438, Percent_Identity=26.2557077625571, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24640198, Length=481, Percent_Identity=23.2848232848233, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24640196, Length=481, Percent_Identity=23.2848232848233, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24640200, Length=481, Percent_Identity=23.2848232848233, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 52211; Mature: 52079
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPG CCCCCCCHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LIRDGIFATGSQGLFGFSDQAAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTV HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELVPKRIRSSAFAFAFFIQFLSV HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAER CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHH IMDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFF HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH GFGNWLPALLSGQGLSVTHSLAYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELFPTNIRARAVGFCYSFSRLST HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHH VFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure TSLPHAEAAANEPLRAAYISARIDRLPAVATIWRLVALLSIAGFFELYDLFQTAYISPG CCCCCCHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LIRDGIFATGSQGLFGFSDQAAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTV HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ATVIMGLQTSALGVIGMRFVVGIGLGVELVTIDTYLSELVPKRIRSSAFAFAFFIQFLSV HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PSVALMSWWLVPQDPFGFSGWRWVVISSAVFALFVWWLRSALPESPRWLAQKGRFDEAER CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHH IMDGIEARCIRDHGKPLDEPEPENVALSGNGRFADMWQPPYRRRALMLIVFHVFQAIGFF HHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH GFGNWLPALLSGQGLSVTHSLAYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELFPTNIRARAVGFCYSFSRLST HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHH VFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIVTIGRFGPRTRNLALEQIAHR HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]