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The map label for this gene is capB [H]

Identifier: 66045400

GI number: 66045400

Start: 2514572

End: 2514784

Strand: Reverse

Name: capB [H]

Synonym: Psyr_2160

Alternate gene names: 66045400

Gene position: 2514784-2514572 (Counterclockwise)

Preceding gene: 66045401

Following gene: 66045398

Centisome position: 41.27

GC content: 49.3

Gene sequence:

>213_bases
ATGTCTAATCGCCAAACCGGCACCGTAAAATGGTTCAACGATGAAAAAGGCTTCGGCTTTATCACTCCACAAGGTGGCGG
TGACGACCTGTTCGTACACTTCAAAGCAATCCAGAGCGACGGTTTCAAAAGCCTGAAAGAAGGCCAGACCGTTACTTTTG
TTGCTGCTAAAGGCCAGAAAGGCATGCAGGCAGAAGAAGTTCAGGTGGCCTGA

Upstream 100 bases:

>100_bases
CTTAATAGCTGTTTTTTTGCTCATTTCGACTATGATAGCCCGGTGTGCCCAGTTGGCCTGAGCAGCACGTTACTGAAAAT
TATGTTTCTGGAGATACACC

Downstream 100 bases:

>100_bases
TTCACCTGACACAAAAAAAACCCCGTCACTGACGGGGTTTTTTTATGCGCAAAAGAAAGTACCGGCTCAGCCGCAATTGA
TACGGGTCACCTTCCCCGAC

Product: cold-shock protein, DNA-binding

Products: NA

Alternate protein names: C8.0; Cold acclimation protein B [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQKGMQAEEVQVA

Sequences:

>Translated_70_residues
MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQKGMQAEEVQVA
>Mature_69_residues
SNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQKGMQAEEVQVA

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=61.1940298507463, Blast_Score=85, Evalue=7e-19,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=56.5217391304348, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=61.1940298507463, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=58.2089552238806, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1787107, Length=63, Percent_Identity=53.968253968254, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=60.655737704918, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=62.2950819672131, Blast_Score=76, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=45.9016393442623, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7627; Mature: 7495

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQK
CCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHCCCEEEEEEECCCC
GMQAEEVQVA
CCCCCEEEEC
>Mature Secondary Structure 
SNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIQSDGFKSLKEGQTVTFVAAKGQK
CCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHCCCEEEEEEECCCC
GMQAEEVQVA
CCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9393697 [H]