| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is aroE [H]
Identifier: 66045372
GI number: 66045372
Start: 2492164
End: 2493018
Strand: Reverse
Name: aroE [H]
Synonym: Psyr_2132
Alternate gene names: 66045372
Gene position: 2493018-2492164 (Counterclockwise)
Preceding gene: 66045374
Following gene: 66045369
Centisome position: 40.91
GC content: 63.51
Gene sequence:
>855_bases ATGACTCATGCTGAAAAACCCTCCATCCTCGCCGGCCTGATCGGCTCGGGCATCCAGGCCTCGCGGACACCTGCCATGCA CGAGCATGAAGGCGATGCACAAGGCATGCGCTATCTGTATCGGCTGATCGATATCGACGCCCTGCAACTGGACATCCATG CCCTGCCCCAACTGCTGGAAGGTGCCAGGCAGTGCGGCTTCACCGGCCTGAATATCACCTTCCCCTGCAAGCAGGCGGTC ATCCCGTTACTGGACGAGCTGTCCGACGAAGCGCGCGGTATCGGCGCGGTGAATACGGTGGTGTTCAAGGACGGCAAGCG TATCGGTCACAACACCGACTGCCTGGGCTTTGCCGAAGGCTTTCAGCGCGGCCTGGACAAGGCCCCACGCCAACAGGTAG TGCAGATGGGTGCAGGTGGCGCGGGCGCTGCCGTGGCTCATGCGCTGCTGAGCGCAGGCGTCGAGCGCCTCAGCGTGTTT GAGGTCGAGCCGCAACGCGCCCAGGGGCTGGTGGACAACCTCAACCAGCACTTCGGTGCCGGACGCGCGCAGGTGGGTAC CGACCTGCCTGCAGCGATGGCCGAAGCCGACGGGCTGGTCAATACCACGCCGGTCGGCATGACCAAACTGCCGGGTACGC CGTTGCCGGTCGAGTTGCTGCGGCCTGAACTGTGGGTGGCGGAAATCATTTACTTTCCGCTGGAAACCGAACTGCTCAGG CATGCCCGCGCACTGGGCTGCCGCACCCTGGATGGCAGCACCATGGCGGTGTTTCAGGCGGTCAAGGCCTTCGAACTGTT CAGTGGCCAGTCCGCCGATGCAGAGCGGATGATGGCGCACTTCCACACGTTGTAA
Upstream 100 bases:
>100_bases GTAATCGACTCCTGCCTGCGGCACTATTAACCATCTGGTACATTCTGTTTAACACCTGCCGCCAACCGGGCAGTGACACA AAAACAAGAGACGTATTTTT
Downstream 100 bases:
>100_bases ACATCAGCGCTTGAGATAACGCAACACAGCGTCGCAGATCATTGCCTTGTGACGCTGTTTGACCTCCTCGCTCCACAGCT CGATCTGAAAGATTTCGCTG
Product: shikimate 5-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MTHAEKPSILAGLIGSGIQASRTPAMHEHEGDAQGMRYLYRLIDIDALQLDIHALPQLLEGARQCGFTGLNITFPCKQAV IPLLDELSDEARGIGAVNTVVFKDGKRIGHNTDCLGFAEGFQRGLDKAPRQQVVQMGAGGAGAAVAHALLSAGVERLSVF EVEPQRAQGLVDNLNQHFGAGRAQVGTDLPAAMAEADGLVNTTPVGMTKLPGTPLPVELLRPELWVAEIIYFPLETELLR HARALGCRTLDGSTMAVFQAVKAFELFSGQSADAERMMAHFHTL
Sequences:
>Translated_284_residues MTHAEKPSILAGLIGSGIQASRTPAMHEHEGDAQGMRYLYRLIDIDALQLDIHALPQLLEGARQCGFTGLNITFPCKQAV IPLLDELSDEARGIGAVNTVVFKDGKRIGHNTDCLGFAEGFQRGLDKAPRQQVVQMGAGGAGAAVAHALLSAGVERLSVF EVEPQRAQGLVDNLNQHFGAGRAQVGTDLPAAMAEADGLVNTTPVGMTKLPGTPLPVELLRPELWVAEIIYFPLETELLR HARALGCRTLDGSTMAVFQAVKAFELFSGQSADAERMMAHFHTL >Mature_283_residues THAEKPSILAGLIGSGIQASRTPAMHEHEGDAQGMRYLYRLIDIDALQLDIHALPQLLEGARQCGFTGLNITFPCKQAVI PLLDELSDEARGIGAVNTVVFKDGKRIGHNTDCLGFAEGFQRGLDKAPRQQVVQMGAGGAGAAVAHALLSAGVERLSVFE VEPQRAQGLVDNLNQHFGAGRAQVGTDLPAAMAEADGLVNTTPVGMTKLPGTPLPVELLRPELWVAEIIYFPLETELLRH ARALGCRTLDGSTMAVFQAVKAFELFSGQSADAERMMAHFHTL
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1787983, Length=273, Percent_Identity=30.03663003663, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1789675, Length=269, Percent_Identity=27.8810408921933, Blast_Score=75, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6320332, Length=277, Percent_Identity=26.7148014440433, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR013708 - InterPro: IPR022893 [H]
Pfam domain/function: PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 30411; Mature: 30280
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHAEKPSILAGLIGSGIQASRTPAMHEHEGDAQGMRYLYRLIDIDALQLDIHALPQLLE CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GARQCGFTGLNITFPCKQAVIPLLDELSDEARGIGAVNTVVFKDGKRIGHNTDCLGFAEG HHHHCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCCHHHHHHH FQRGLDKAPRQQVVQMGAGGAGAAVAHALLSAGVERLSVFEVEPQRAQGLVDNLNQHFGA HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCC GRAQVGTDLPAAMAEADGLVNTTPVGMTKLPGTPLPVELLRPELWVAEIIYFPLETELLR CCHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCHHHHHHH HARALGCRTLDGSTMAVFQAVKAFELFSGQSADAERMMAHFHTL HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC >Mature Secondary Structure THAEKPSILAGLIGSGIQASRTPAMHEHEGDAQGMRYLYRLIDIDALQLDIHALPQLLE CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GARQCGFTGLNITFPCKQAVIPLLDELSDEARGIGAVNTVVFKDGKRIGHNTDCLGFAEG HHHHCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCCHHHHHHH FQRGLDKAPRQQVVQMGAGGAGAAVAHALLSAGVERLSVFEVEPQRAQGLVDNLNQHFGA HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCC GRAQVGTDLPAAMAEADGLVNTTPVGMTKLPGTPLPVELLRPELWVAEIIYFPLETELLR CCHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCHHHHHHH HARALGCRTLDGSTMAVFQAVKAFELFSGQSADAERMMAHFHTL HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12692562; 11572948 [H]