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The map label for this gene is pdtaR [H]

Identifier: 66045344

GI number: 66045344

Start: 2455927

End: 2456502

Strand: Reverse

Name: pdtaR [H]

Synonym: Psyr_2104

Alternate gene names: 66045344

Gene position: 2456502-2455927 (Counterclockwise)

Preceding gene: 66045345

Following gene: 66045342

Centisome position: 40.31

GC content: 60.07

Gene sequence:

>576_bases
ATGCTGCGTATCCTGCTTATCAATGACACCGCCAAAAAGGTCGGCCGCCTCAGGTCAGCCTTGATAGAGGCCGGTTTCGA
CGTGATCGACGAATCCGGACTGATCATCGACCTGCCCGCGCGCGTTGAAGCCGTGCGCCCGGACGTCATCCTCATCGACA
CTGAATCACCTGGTCGCGACGTGATGGAGCAAGTGGTGCTGGTCAGCCGCGACCAGCCACGGCCCATCGTGATGTTCACC
GACGAGCACGATCCGGGCGTGATGCGCCAGGCGATCAAGTCCGGAGTCAGCGCTTATATCGTCGAGGGTATCCAGGCGCA
ACGGCTGCAACCGATTCTGGATGTGGCGATGGCCCGCTTTGAAAGCGATCAGGCGCTGCGCGCGCAACTGCATGCACGCG
ATCAGCAACTGGCCGAGCGCAAACGCATCGAACTGGCCAAGGGGCTGCTGATGAAAATGAAGGATTGCAACGAAGAGGAC
GCTTATACGCTGATGCGGCGTCAGGCGATGAGCCGCCAGCAGAAGCTGATTCAGGTGGCCGAGCAGATTATCGCGATGAG
CGAACTGCTGGGCTGA

Upstream 100 bases:

>100_bases
GGGACGGCAGCGATCCGGCGGGCTACGCGCGTAGCTTCAAGCTCCACTCGCTGGCCGACGACGTGCCCGCTATGGCCAGT
CGTTGACGGAGAACGTAACC

Downstream 100 bases:

>100_bases
AGCCACGAAGAACGCCTGTCCGTACAGGCGTTCTTCACAGGTTACAGGGGCGCAGCCTGTCAGCTCAGTTGCACATCCTT
CATCGCCGGCACGTAGCCGT

Product: response regulator receiver:ANTAR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MLRILLINDTAKKVGRLRSALIEAGFDVIDESGLIIDLPARVEAVRPDVILIDTESPGRDVMEQVVLVSRDQPRPIVMFT
DEHDPGVMRQAIKSGVSAYIVEGIQAQRLQPILDVAMARFESDQALRAQLHARDQQLAERKRIELAKGLLMKMKDCNEED
AYTLMRRQAMSRQQKLIQVAEQIIAMSELLG

Sequences:

>Translated_191_residues
MLRILLINDTAKKVGRLRSALIEAGFDVIDESGLIIDLPARVEAVRPDVILIDTESPGRDVMEQVVLVSRDQPRPIVMFT
DEHDPGVMRQAIKSGVSAYIVEGIQAQRLQPILDVAMARFESDQALRAQLHARDQQLAERKRIELAKGLLMKMKDCNEED
AYTLMRRQAMSRQQKLIQVAEQIIAMSELLG
>Mature_191_residues
MLRILLINDTAKKVGRLRSALIEAGFDVIDESGLIIDLPARVEAVRPDVILIDTESPGRDVMEQVVLVSRDQPRPIVMFT
DEHDPGVMRQAIKSGVSAYIVEGIQAQRLQPILDVAMARFESDQALRAQLHARDQQLAERKRIELAKGLLMKMKDCNEED
AYTLMRRQAMSRQQKLIQVAEQIIAMSELLG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21516; Mature: 21516

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRILLINDTAKKVGRLRSALIEAGFDVIDESGLIIDLPARVEAVRPDVILIDTESPGRD
CEEEEEECHHHHHHHHHHHHHHHHCHHHCCCCCCEEECCCHHHHCCCCEEEEECCCCCHH
VMEQVVLVSRDQPRPIVMFTDEHDPGVMRQAIKSGVSAYIVEGIQAQRLQPILDVAMARF
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
ESDQALRAQLHARDQQLAERKRIELAKGLLMKMKDCNEEDAYTLMRRQAMSRQQKLIQVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EQIIAMSELLG
HHHHHHHHHCC
>Mature Secondary Structure
MLRILLINDTAKKVGRLRSALIEAGFDVIDESGLIIDLPARVEAVRPDVILIDTESPGRD
CEEEEEECHHHHHHHHHHHHHHHHCHHHCCCCCCEEECCCHHHHCCCCEEEEECCCCCHH
VMEQVVLVSRDQPRPIVMFTDEHDPGVMRQAIKSGVSAYIVEGIQAQRLQPILDVAMARF
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
ESDQALRAQLHARDQQLAERKRIELAKGLLMKMKDCNEEDAYTLMRRQAMSRQQKLIQVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EQIIAMSELLG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]