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The map label for this gene is dgdR [H]

Identifier: 66045044

GI number: 66045044

Start: 2073609

End: 2074463

Strand: Direct

Name: dgdR [H]

Synonym: Psyr_1800

Alternate gene names: 66045044

Gene position: 2073609-2074463 (Clockwise)

Preceding gene: 66045042

Following gene: 66045046

Centisome position: 34.03

GC content: 61.87

Gene sequence:

>855_bases
ATGACGGCCATTCTCGACATCGAACTGGTGCGCACCTTTCATGCGGTGGCGCGGATAGGAAAGTTTTCCGCAGCCGCCGA
GCAACTTCATAAAAGCCCGGCAGCCGTGAGTGTGCATATCCAGCGCCTTGAGGCCGTGGCAGGCGGGCGCTTGCTCAATC
GGGACAACCAGGCAGTGTCGCTGACGGCGCTGGGCAAGCGCCTGCTGTTGTCGACGACAGAGCTGCTGTCCACGCACGAC
CGGGTGCTGGCGGATCTGCAAGGCACTCATCTGGCCGGACGCATCACGCTGGGGGTTCCGGATGAGTACGCCGTGCATGT
CATTCGCGACATCCTGCCAGTGTTCGCGGCCGCGTGGCCCAATGTCGTGCTGGAAATGAAATCCGCACCCAGCTACGCCC
TGCGCGAGCAGGTTGCGCGTGGCAAGTTGCAGACAGCAGTGATCGCGCAACCCAAAGGGCAGCTGAGTGCTGATGCGCAG
TTTCTGGTATCGACCAAGCCGGTCTGGGTCGGGCCGGCCAGCGTTGCACTGGCATCCGCTGACCCGGTGCCGCTGGCCGT
TCACGCAGCGCAATGTCCCTATCGTGAAGCCATGCTGGCCTCACTCAAAGACAATGGCCGCAAAATCCGTGTAGTCCTCG
AAAGCCCGTCCAATCAGGCGATCAAGGCCTGTGTGGAAGCGGGCCTGGCGATCAGCCTCATCGATCGGAGCGGGGTCACG
CAAGCCATGCAGATTCTCGATGACCTGCCTGAAATACCCGAGCACGAAATCGTCTTCCTGCGCTCGCCGTCGTCACAGAA
CGACGAGGCGGTGAGCCTGCTGGCGCAGGCCCTGCAGAAGTATTTTCGGGTTTAG

Upstream 100 bases:

>100_bases
GGAGCAATCGACAGGTATGGGTTCATGGACACAGGTTACGAAACCGGCGTAGTCTAAGAAATCAAAATTAACTGCATGAG
TTGTTCAGGAATTATGAATC

Downstream 100 bases:

>100_bases
CCGGGAACACTGCAGCCGAAGTGTGTTATCGACTGCAGGAACGCTTTCGGCTCAACCGTCCTTGAACAGAAAGCTGTAGG
CATTCAGCGCCGGCACGCCG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTAILDIELVRTFHAVARIGKFSAAAEQLHKSPAAVSVHIQRLEAVAGGRLLNRDNQAVSLTALGKRLLLSTTELLSTHD
RVLADLQGTHLAGRITLGVPDEYAVHVIRDILPVFAAAWPNVVLEMKSAPSYALREQVARGKLQTAVIAQPKGQLSADAQ
FLVSTKPVWVGPASVALASADPVPLAVHAAQCPYREAMLASLKDNGRKIRVVLESPSNQAIKACVEAGLAISLIDRSGVT
QAMQILDDLPEIPEHEIVFLRSPSSQNDEAVSLLAQALQKYFRV

Sequences:

>Translated_284_residues
MTAILDIELVRTFHAVARIGKFSAAAEQLHKSPAAVSVHIQRLEAVAGGRLLNRDNQAVSLTALGKRLLLSTTELLSTHD
RVLADLQGTHLAGRITLGVPDEYAVHVIRDILPVFAAAWPNVVLEMKSAPSYALREQVARGKLQTAVIAQPKGQLSADAQ
FLVSTKPVWVGPASVALASADPVPLAVHAAQCPYREAMLASLKDNGRKIRVVLESPSNQAIKACVEAGLAISLIDRSGVT
QAMQILDDLPEIPEHEIVFLRSPSSQNDEAVSLLAQALQKYFRV
>Mature_283_residues
TAILDIELVRTFHAVARIGKFSAAAEQLHKSPAAVSVHIQRLEAVAGGRLLNRDNQAVSLTALGKRLLLSTTELLSTHDR
VLADLQGTHLAGRITLGVPDEYAVHVIRDILPVFAAAWPNVVLEMKSAPSYALREQVARGKLQTAVIAQPKGQLSADAQF
LVSTKPVWVGPASVALASADPVPLAVHAAQCPYREAMLASLKDNGRKIRVVLESPSNQAIKACVEAGLAISLIDRSGVTQ
AMQILDDLPEIPEHEIVFLRSPSSQNDEAVSLLAQALQKYFRV

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=281, Percent_Identity=28.1138790035587, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787806, Length=238, Percent_Identity=26.0504201680672, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788887, Length=150, Percent_Identity=29.3333333333333, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30530; Mature: 30398

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAILDIELVRTFHAVARIGKFSAAAEQLHKSPAAVSVHIQRLEAVAGGRLLNRDNQAVS
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCEEE
LTALGKRLLLSTTELLSTHDRVLADLQGTHLAGRITLGVPDEYAVHVIRDILPVFAAAWP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCC
NVVLEMKSAPSYALREQVARGKLQTAVIAQPKGQLSADAQFLVSTKPVWVGPASVALASA
HHEEEECCCCCHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEECCCEEECHHHEEEECC
DPVPLAVHAAQCPYREAMLASLKDNGRKIRVVLESPSNQAIKACVEAGLAISLIDRSGVT
CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCEEEEECCCCHH
QAMQILDDLPEIPEHEIVFLRSPSSQNDEAVSLLAQALQKYFRV
HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAILDIELVRTFHAVARIGKFSAAAEQLHKSPAAVSVHIQRLEAVAGGRLLNRDNQAVS
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCEEE
LTALGKRLLLSTTELLSTHDRVLADLQGTHLAGRITLGVPDEYAVHVIRDILPVFAAAWP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCC
NVVLEMKSAPSYALREQVARGKLQTAVIAQPKGQLSADAQFLVSTKPVWVGPASVALASA
HHEEEECCCCCHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEECCCEEECHHHEEEECC
DPVPLAVHAAQCPYREAMLASLKDNGRKIRVVLESPSNQAIKACVEAGLAISLIDRSGVT
CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCEEEEECCCCHH
QAMQILDDLPEIPEHEIVFLRSPSSQNDEAVSLLAQALQKYFRV
HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]