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The map label for this gene is sotB [H]

Identifier: 66045032

GI number: 66045032

Start: 2039528

End: 2040727

Strand: Direct

Name: sotB [H]

Synonym: Psyr_1788

Alternate gene names: 66045032

Gene position: 2039528-2040727 (Clockwise)

Preceding gene: 66045031

Following gene: 66045035

Centisome position: 33.47

GC content: 63.58

Gene sequence:

>1200_bases
GTGAGTCGCTTTGAAACCGCTGGAAACGTACAAACAAAACCCGCTTCATGGTGGGCCGTTGGCAGCGTATCGCTTGGGTC
GTTCGCCACCGTCACCACTGAATTTCTGCCGGTCGGGCTGCTGCCCGATATCGCTCGCGACCTGGGAACCAGCATCAGCC
AGACAGGCTTGATGATGGCCGTCCCTGGCATCCTCGCGGCCATCTCGGCGCCGTCCTGTATTGCCCTGTTCAGTCATGTC
GACCGCAAGCGCCTGCTGCTCGGGCTGCTGTCGATATTGCTGGCCTCCAACCTGATCGTCGCGTTGTCCACGCACTTCTG
GCTGACCCTGGCGGGCAGGGTCCTGCTCGGCTTCGCGCTGGGGGGATTCTGGACGATTGCCGGGTCGCTCGGGCCACGCT
TGAGGCCCGGCAAGGAGGGCGTCAAGGCCACCGCGTATGTGCTGGCGGGCGTCTCGATCGGCACTGTCGCCGGGATTCCG
GCCGGCACGTTGATCGGTGAAGCCTTCGGCTGGCGTGCTGCGTTTGAAACAGCGGCAGTGGTCACGGTTGCCGTGGGGGT
GTTGATTGCAACCTTCCTGCCTGCGTTGCCGGGCGAGCGCTCTGCCGGCATCAGCCAGATGTTGTCGCTGGCTGGCGAGC
AGCGCATTCGTCGCATGTTCGCTGCCGCACTGTTGATCTATGTCGGGCACTTCGCGGCTTACACGTACCTCGCGCCCTTC
GTGCAGGAATTCGCGCATATTCAGGGTCAGGCCCTGGGCGCATTGCTCTTCGCCTTCGGCCTGGCGGCTGTTGCAGGCAA
CCTGGCCGGTGGAGCTCTGGCGGCCAGGAGCGCACCGTCCTCGGTGCTGATCATGACCCTGCTGATGCTGGGTTCGCTGA
CCGCGCTGCTGATGTTCGTCGGTAACCCGTGGCTGCTCTGGCCGGTGATTCTGGTCTGGGGGTTCGCGTTCGGGATGATC
CCCATCACCACGCAGATCTGGTGCTTCGAGGCTTCAAACGATCGTGTGGAAGGCGTTCAGGCGCTGCTGGTCTGTGTGGT
GAATCTGTCGATTGGCGGCGGGGCGTTCATTGGCGGTGCGGTGTCCGCTCGGGCCGGCTTTACCGCTGCCATCGTGATCG
GTGCGGTATGTGCTGCGCTGTCCATGCTCACCGTGATGCTGGCGATGCGCAACTCAAAGCCGGTCAGTTGCACCGACTGA

Upstream 100 bases:

>100_bases
CGCAAGGTGGCTTCGATGCGCGCTTACACGTTAGGGTTGGCCGCTTCCACGCGCTGGCCTGAGCGGCCGGTCGCTGACAT
CCCTGAATTCTGGAACCGCT

Downstream 100 bases:

>100_bases
TCTGCCAATAATGAGAGACCGCGGCGACGCTGAATCCATCGCCGCGATACCTCATCACACCTTCGTCACACCCTCAGCCT
GCCTTGAAAAATGCGACCTT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MSRFETAGNVQTKPASWWAVGSVSLGSFATVTTEFLPVGLLPDIARDLGTSISQTGLMMAVPGILAAISAPSCIALFSHV
DRKRLLLGLLSILLASNLIVALSTHFWLTLAGRVLLGFALGGFWTIAGSLGPRLRPGKEGVKATAYVLAGVSIGTVAGIP
AGTLIGEAFGWRAAFETAAVVTVAVGVLIATFLPALPGERSAGISQMLSLAGEQRIRRMFAAALLIYVGHFAAYTYLAPF
VQEFAHIQGQALGALLFAFGLAAVAGNLAGGALAARSAPSSVLIMTLLMLGSLTALLMFVGNPWLLWPVILVWGFAFGMI
PITTQIWCFEASNDRVEGVQALLVCVVNLSIGGGAFIGGAVSARAGFTAAIVIGAVCAALSMLTVMLAMRNSKPVSCTD

Sequences:

>Translated_399_residues
MSRFETAGNVQTKPASWWAVGSVSLGSFATVTTEFLPVGLLPDIARDLGTSISQTGLMMAVPGILAAISAPSCIALFSHV
DRKRLLLGLLSILLASNLIVALSTHFWLTLAGRVLLGFALGGFWTIAGSLGPRLRPGKEGVKATAYVLAGVSIGTVAGIP
AGTLIGEAFGWRAAFETAAVVTVAVGVLIATFLPALPGERSAGISQMLSLAGEQRIRRMFAAALLIYVGHFAAYTYLAPF
VQEFAHIQGQALGALLFAFGLAAVAGNLAGGALAARSAPSSVLIMTLLMLGSLTALLMFVGNPWLLWPVILVWGFAFGMI
PITTQIWCFEASNDRVEGVQALLVCVVNLSIGGGAFIGGAVSARAGFTAAIVIGAVCAALSMLTVMLAMRNSKPVSCTD
>Mature_398_residues
SRFETAGNVQTKPASWWAVGSVSLGSFATVTTEFLPVGLLPDIARDLGTSISQTGLMMAVPGILAAISAPSCIALFSHVD
RKRLLLGLLSILLASNLIVALSTHFWLTLAGRVLLGFALGGFWTIAGSLGPRLRPGKEGVKATAYVLAGVSIGTVAGIPA
GTLIGEAFGWRAAFETAAVVTVAVGVLIATFLPALPGERSAGISQMLSLAGEQRIRRMFAAALLIYVGHFAAYTYLAPFV
QEFAHIQGQALGALLFAFGLAAVAGNLAGGALAARSAPSSVLIMTLLMLGSLTALLMFVGNPWLLWPVILVWGFAFGMIP
ITTQIWCFEASNDRVEGVQALLVCVVNLSIGGGAFIGGAVSARAGFTAAIVIGAVCAALSMLTVMLAMRNSKPVSCTD

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI145693198, Length=396, Percent_Identity=30.050505050505, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1787808, Length=391, Percent_Identity=27.6214833759591, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1787947, Length=392, Percent_Identity=27.2959183673469, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786595, Length=278, Percent_Identity=28.0575539568345, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41210; Mature: 41079

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFETAGNVQTKPASWWAVGSVSLGSFATVTTEFLPVGLLPDIARDLGTSISQTGLMMA
CCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHCCHHHH
VPGILAAISAPSCIALFSHVDRKRLLLGLLSILLASNLIVALSTHFWLTLAGRVLLGFAL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GGFWTIAGSLGPRLRPGKEGVKATAYVLAGVSIGTVAGIPAGTLIGEAFGWRAAFETAAV
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VTVAVGVLIATFLPALPGERSAGISQMLSLAGEQRIRRMFAAALLIYVGHFAAYTYLAPF
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQEFAHIQGQALGALLFAFGLAAVAGNLAGGALAARSAPSSVLIMTLLMLGSLTALLMFV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GNPWLLWPVILVWGFAFGMIPITTQIWCFEASNDRVEGVQALLVCVVNLSIGGGAFIGGA
CCCHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHCCCH
VSARAGFTAAIVIGAVCAALSMLTVMLAMRNSKPVSCTD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SRFETAGNVQTKPASWWAVGSVSLGSFATVTTEFLPVGLLPDIARDLGTSISQTGLMMA
CCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHCCHHHH
VPGILAAISAPSCIALFSHVDRKRLLLGLLSILLASNLIVALSTHFWLTLAGRVLLGFAL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GGFWTIAGSLGPRLRPGKEGVKATAYVLAGVSIGTVAGIPAGTLIGEAFGWRAAFETAAV
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VTVAVGVLIATFLPALPGERSAGISQMLSLAGEQRIRRMFAAALLIYVGHFAAYTYLAPF
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQEFAHIQGQALGALLFAFGLAAVAGNLAGGALAARSAPSSVLIMTLLMLGSLTALLMFV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GNPWLLWPVILVWGFAFGMIPITTQIWCFEASNDRVEGVQALLVCVVNLSIGGGAFIGGA
CCCHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHCCCH
VSARAGFTAAIVIGAVCAALSMLTVMLAMRNSKPVSCTD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA