Click here to switch to the map view.

The map label for this gene is ytcD [H]

Identifier: 66044997

GI number: 66044997

Start: 1992031

End: 1992369

Strand: Reverse

Name: ytcD [H]

Synonym: Psyr_1752

Alternate gene names: 66044997

Gene position: 1992369-1992031 (Counterclockwise)

Preceding gene: 66044999

Following gene: 66044989

Centisome position: 32.7

GC content: 53.1

Gene sequence:

>339_bases
GTGACAGCAATGAGCCATCGAACGTTGTATACACCGGACTCTGCTGCCGAAGACGTCAACAGCGTACTCGCGCTGTTGCG
CGGCAGGTGGAAACTGGTGATTTTGTTCCACCTGTTCGACGGGAAGATTCAGCGCTTTTCAGATCTCGAACGCCGAGTGA
CAGGCATATCGCAAAAAATGCTCGCTCAACAATTACGTAGCCTGGAAAGCGATGGGTTGGTCATTCGAACCCTCCACGAC
TTCAAACCCCCTCAGGTTGATTATCGCCTTACGCCATGGGGACAACGGCTTTGTCCAGTGCTGGACAGCATGCTTGGATG
GTCAGAGTCTCGTGAGTGA

Upstream 100 bases:

>100_bases
GGGTACCGAGTGATATTCATCGAGATGCCTCATTATCAAATGACGAGACACTCATGATCATCGCCAAGGGGTAACCCCAC
AAGAACGCACGAAAAAGTAA

Downstream 100 bases:

>100_bases
ATACGAGTCATGACTTACCCTGACGCAGGTACGTAACTGGCCCCACCGCCATCCAAAAAAAAGGCCGCTCAATGAGCGGC
CTTCTTTGTTTGCGCGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MTAMSHRTLYTPDSAAEDVNSVLALLRGRWKLVILFHLFDGKIQRFSDLERRVTGISQKMLAQQLRSLESDGLVIRTLHD
FKPPQVDYRLTPWGQRLCPVLDSMLGWSESRE

Sequences:

>Translated_112_residues
MTAMSHRTLYTPDSAAEDVNSVLALLRGRWKLVILFHLFDGKIQRFSDLERRVTGISQKMLAQQLRSLESDGLVIRTLHD
FKPPQVDYRLTPWGQRLCPVLDSMLGWSESRE
>Mature_111_residues
TAMSHRTLYTPDSAAEDVNSVLALLRGRWKLVILFHLFDGKIQRFSDLERRVTGISQKMLAQQLRSLESDGLVIRTLHDF
KPPQVDYRLTPWGQRLCPVLDSMLGWSESRE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=88, Percent_Identity=42.0454545454545, Blast_Score=75, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12942; Mature: 12811

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAMSHRTLYTPDSAAEDVNSVLALLRGRWKLVILFHLFDGKIQRFSDLERRVTGISQKM
CCCCCCCEEECCCHHHHHHHHHHHHHHCCHHEEEEEEHHCCHHHHHHHHHHHHHHHHHHH
LAQQLRSLESDGLVIRTLHDFKPPQVDYRLTPWGQRLCPVLDSMLGWSESRE
HHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAMSHRTLYTPDSAAEDVNSVLALLRGRWKLVILFHLFDGKIQRFSDLERRVTGISQKM
CCCCCCEEECCCHHHHHHHHHHHHHHCCHHEEEEEEHHCCHHHHHHHHHHHHHHHHHHH
LAQQLRSLESDGLVIRTLHDFKPPQVDYRLTPWGQRLCPVLDSMLGWSESRE
HHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]