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The map label for this gene is ycfH [C]

Identifier: 66044900

GI number: 66044900

Start: 1859037

End: 1859822

Strand: Direct

Name: ycfH [C]

Synonym: Psyr_1655

Alternate gene names: 66044900

Gene position: 1859037-1859822 (Clockwise)

Preceding gene: 66044899

Following gene: 66044901

Centisome position: 30.51

GC content: 62.6

Gene sequence:

>786_bases
ATGCTTGTAGATTCCCATTGTCACCTCGATCGCCTTGACCTTGCCCAGCACGACGGCTCTCTGGATGCCGCACTCGACGC
CGCGCGCGGCAGAGGGGTCGGGCATTTTCTCTGCATCGGTGTCAGCGCCGACAATGCGGGGGCGGTCAAGGCACTCGCCG
AACGCTACGCGGATGTCGATTGCTCGGTGGGCATTCATCCGCTGGACGTGAAGCCCGGCGAAATGCCGCCCCTGGACTGG
TTGCTCAAGGAGCTGGATCACCCACGGGTGGTGGCCATTGGCGAGACCGGTCTGGATTATCACTACGAACCTGAAGCGGC
CGAGATTCAACAAGCGTCTTTCCGGGTTCACCTCGAGGCGGCCAGAATCACTGAAAAACCAGTGGTTATCCACACTCGGG
GCGCACGTGCCGATACGCTCAGCCTGCTGCGTGAGGCTGCCTTGCCCCACGCCGGTGTCCTGCACTGTTTCACCGAGGAC
TGGGAGATGGCCAAGGCCGCGCTGGACCTGGGGTACTACATTTCGCTGTCCGGCATCGTGACGTTTCGTAATGCCGATGC
CCTGCGCGACGTTGCAAGGCAGGTGCCCGCCGATCGTCTGCTGGTCGAGACCGATTCCCCGTACCTCGCGCCGATCCCTT
ACCGGGGCAAGCCGAACCTGCCCCAGTACGTACGTGAGGTTGCCGAGTTTCTGGCAATGCTGCGAGGCGAGTCCTACGAG
CACTTTGCCGAGCAGACCACCGCCAACTTTGCCCGCCTGTTTCCGCTGGCGCACGTTCAGCGCTGA

Upstream 100 bases:

>100_bases
ATGACGGCGACAACACCGCCCGCAATCTGATCGAAACTCACCTGGTCGGCGCTCTCAAGTCCGATCGTCCAACCCATACG
ATGTAGTTGTGTTTTAAGCC

Downstream 100 bases:

>100_bases
CGGATGCTCAAATCCGCGGGCAGACAAATCGCAGGCAAAAAAAACCCGGATTCTGGGGGGTGAAGCCGGGTCAAGACCAT
TAGGAGTAAAACAAAGGCGC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MLVDSHCHLDRLDLAQHDGSLDAALDAARGRGVGHFLCIGVSADNAGAVKALAERYADVDCSVGIHPLDVKPGEMPPLDW
LLKELDHPRVVAIGETGLDYHYEPEAAEIQQASFRVHLEAARITEKPVVIHTRGARADTLSLLREAALPHAGVLHCFTED
WEMAKAALDLGYYISLSGIVTFRNADALRDVARQVPADRLLVETDSPYLAPIPYRGKPNLPQYVREVAEFLAMLRGESYE
HFAEQTTANFARLFPLAHVQR

Sequences:

>Translated_261_residues
MLVDSHCHLDRLDLAQHDGSLDAALDAARGRGVGHFLCIGVSADNAGAVKALAERYADVDCSVGIHPLDVKPGEMPPLDW
LLKELDHPRVVAIGETGLDYHYEPEAAEIQQASFRVHLEAARITEKPVVIHTRGARADTLSLLREAALPHAGVLHCFTED
WEMAKAALDLGYYISLSGIVTFRNADALRDVARQVPADRLLVETDSPYLAPIPYRGKPNLPQYVREVAEFLAMLRGESYE
HFAEQTTANFARLFPLAHVQR
>Mature_261_residues
MLVDSHCHLDRLDLAQHDGSLDAALDAARGRGVGHFLCIGVSADNAGAVKALAERYADVDCSVGIHPLDVKPGEMPPLDW
LLKELDHPRVVAIGETGLDYHYEPEAAEIQQASFRVHLEAARITEKPVVIHTRGARADTLSLLREAALPHAGVLHCFTED
WEMAKAALDLGYYISLSGIVTFRNADALRDVARQVPADRLLVETDSPYLAPIPYRGKPNLPQYVREVAEFLAMLRGESYE
HFAEQTTANFARLFPLAHVQR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=29.8892988929889, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=30.2583025830258, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=29.9638989169675, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI225903424, Length=223, Percent_Identity=30.0448430493274, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI14042943, Length=273, Percent_Identity=24.9084249084249, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=29.296875, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI225903439, Length=225, Percent_Identity=26.2222222222222, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=29.1845493562232, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=52.34375, Blast_Score=240, Evalue=8e-65,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=31.7647058823529, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI48994985, Length=247, Percent_Identity=33.1983805668016, Blast_Score=111, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=267, Percent_Identity=29.5880149812734, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71980746, Length=267, Percent_Identity=26.2172284644195, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=294, Percent_Identity=26.1904761904762, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17565396, Length=140, Percent_Identity=32.1428571428571, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648690, Length=218, Percent_Identity=32.5688073394495, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28804; Mature: 28804

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDSHCHLDRLDLAQHDGSLDAALDAARGRGVGHFLCIGVSADNAGAVKALAERYADVD
CEECCCCCCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC
CSVGIHPLDVKPGEMPPLDWLLKELDHPRVVAIGETGLDYHYEPEAAEIQQASFRVHLEA
CCCCCEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHEEEEEEH
ARITEKPVVIHTRGARADTLSLLREAALPHAGVLHCFTEDWEMAKAALDLGYYISLSGIV
HHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCEEEEEEEEE
TFRNADALRDVARQVPADRLLVETDSPYLAPIPYRGKPNLPQYVREVAEFLAMLRGESYE
EECCHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
HFAEQTTANFARLFPLAHVQR
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVDSHCHLDRLDLAQHDGSLDAALDAARGRGVGHFLCIGVSADNAGAVKALAERYADVD
CEECCCCCCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC
CSVGIHPLDVKPGEMPPLDWLLKELDHPRVVAIGETGLDYHYEPEAAEIQQASFRVHLEA
CCCCCEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHEEEEEEH
ARITEKPVVIHTRGARADTLSLLREAALPHAGVLHCFTEDWEMAKAALDLGYYISLSGIV
HHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCEEEEEEEEE
TFRNADALRDVARQVPADRLLVETDSPYLAPIPYRGKPNLPQYVREVAEFLAMLRGESYE
EECCHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
HFAEQTTANFARLFPLAHVQR
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]