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The map label for this gene is phnR [H]

Identifier: 66044852

GI number: 66044852

Start: 1806453

End: 1807214

Strand: Direct

Name: phnR [H]

Synonym: Psyr_1607

Alternate gene names: 66044852

Gene position: 1806453-1807214 (Clockwise)

Preceding gene: 66044845

Following gene: 66044853

Centisome position: 29.64

GC content: 59.06

Gene sequence:

>762_bases
ATGCCTCGTAACAGGGCTGGTCTAGTCCAGACGGATACCGGAATGCGCGAAGATGTACCACGGGCGGTAACAACGATTTG
CCATGCGCTGCAGGAGCAGATCGAACACGGCTTGTTGCCGCATGGCAGCAAGTTGCCTGCAGAGCGCAAGCTCAGTGAGG
TATTCGCCACCACGCGCATCACCTTGCGTGAAGCGCTTTTGCAACTCGAGTCGCAGGGGCTGATTTACCGCGAAGAGCGG
CGTGGCTGGTTCATCTCGCCGCCGCGGCTGGCCTATGACCTGATCAGGCGCAGCCATTTCCACGCAATGGTCTGTGCCCA
GGGAAGGGTGCCTCACACCCAGCTTCTTTCTGCACGCCTGCAACCTGCTTCAGCGATGATCTGTGAAATGCTGGAACTGC
CGGCGCTGTCGAGCGTGATCCAGATCTGTCGCGCGCGGCGCATCGATCAGCGCCTGGTGCTGTATGTCGAGCACTACCTG
AGGCCGGAGTTGTTCCCCGGCATTCTCGAACACGATCTGAACGAATCGCTGACCGCACTCTACGCCCGCTGCTACGACAT
TCACTGCGGCCGGGTGCGCTTCGACATGGTTCCCACGTCTTTGCACAGCGAAGCATCCGCAGCACTGAAGGTTTCACTGG
GTAGTCCGGGCCTGCGCATTGCACGAGTCAATTACGACCGCAAAGACCGGTTGATCGATTGCGATCTCGAATACTGGCGT
CATGATGCTATTCATGTGCGCGCTGAGGTGCATGGCGACTGA

Upstream 100 bases:

>100_bases
GCACAGTTGGCATGCAACGTGATTTGTCCTGTAACAGGACAGTCATGTACCCGGCCTAGGCTCACAGCAAGGGAGTCAAC
GGCGTTGACCGCACTGATGT

Downstream 100 bases:

>100_bases
ACGCCTGTATTTAAAACCTGCTTGCCAGGCACGGTCTGCACCGTCGTTAGTTGCCTGTTTTCTATAAGTAAATGCTCATT
TCAGTGATCGGAAACTTGCG

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPRNRAGLVQTDTGMREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREER
RGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYL
RPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWR
HDAIHVRAEVHGD

Sequences:

>Translated_253_residues
MPRNRAGLVQTDTGMREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREER
RGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYL
RPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWR
HDAIHVRAEVHGD
>Mature_252_residues
PRNRAGLVQTDTGMREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERR
GWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLR
PELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRH
DAIHVRAEVHGD

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=226, Percent_Identity=28.3185840707965, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI87082252, Length=210, Percent_Identity=24.2857142857143, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788418, Length=219, Percent_Identity=26.4840182648402, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786950, Length=193, Percent_Identity=24.3523316062176, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28957; Mature: 28826

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNRAGLVQTDTGMREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRI
CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
TLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARL
HHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHC
QPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTAL
CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
YARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWR
HHHHHHCCCCEEEEECCCCHHHCCCCCEEEEEECCCCEEEEEECCCCCCCEEECCHHHHC
HDAIHVRAEVHGD
CCEEEEEEEECCC
>Mature Secondary Structure 
PRNRAGLVQTDTGMREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRI
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
TLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARL
HHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHC
QPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTAL
CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
YARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWR
HHHHHHCCCCEEEEECCCCHHHCCCCCEEEEEECCCCEEEEEECCCCCCCEEECCHHHHC
HDAIHVRAEVHGD
CCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA