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The map label for this gene is ygaF [H]

Identifier: 66044792

GI number: 66044792

Start: 1739972

End: 1740445

Strand: Reverse

Name: ygaF [H]

Synonym: Psyr_1546

Alternate gene names: 66044792

Gene position: 1740445-1739972 (Counterclockwise)

Preceding gene: 66044793

Following gene: 66044789

Centisome position: 28.56

GC content: 56.33

Gene sequence:

>474_bases
ATGACTGTCACAGTAGATCATCCGGTTCCCGATTTTCAGGCACCCGCTACCAGCGGACAGACTGTCGAGCTGTCTGCGCT
CAAGGGCCAGCAGGTCGTGATTTATTTTTACCCGAAAGACAACACGCCCGGCTGCACCACGCAGGGTCAGGACTTTCGTG
ACCATATCGCGCAGTTTCAGGCAGCCAACACGGTTGTGCTCGGTGTTTCCCGCGACAGCCTGAAGACCCATGAAAACTTC
AAGGCCAAGCAGTCTTTCCCGTTCGAGCTGATTTCGGACAAGGACGAAGCCGTCTGCCAGCTGTTCGACGTCATCAAGCT
CAAGAAGCTTTATGGCAAGGAATACCTGGGCGTGGACCGCAGCACCTTCCTGATCGACAAGGAAGGCGTCCTGCGTCAGG
AATGGCGCGGCGTGAAAGTGCCGGGCCATGTGGCTGAAGTATTAGCACAGGCCGAAGCCCTGAACAAAGGCTGA

Upstream 100 bases:

>100_bases
CAGCTGGCTGCGCGATCAATTCCTCGATTTCGCCGACGCGTTGAATCTGGACGCACTGATCGAACCCTGGCGCCCACAAG
CCCCAATGTAAGGAGTCCTC

Downstream 100 bases:

>100_bases
TCCGCGTGCCCCGCTGCGGCGCGCAAGGTGCCGCAGCGATTCAGCCCTGCTGTCGCGGCTATCGCGTCAAAGCAACGGGG
CTACCGTCGGCTCATTGCGC

Product: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTVTVDHPVPDFQAPATSGQTVELSALKGQQVVIYFYPKDNTPGCTTQGQDFRDHIAQFQAANTVVLGVSRDSLKTHENF
KAKQSFPFELISDKDEAVCQLFDVIKLKKLYGKEYLGVDRSTFLIDKEGVLRQEWRGVKVPGHVAEVLAQAEALNKG

Sequences:

>Translated_157_residues
MTVTVDHPVPDFQAPATSGQTVELSALKGQQVVIYFYPKDNTPGCTTQGQDFRDHIAQFQAANTVVLGVSRDSLKTHENF
KAKQSFPFELISDKDEAVCQLFDVIKLKKLYGKEYLGVDRSTFLIDKEGVLRQEWRGVKVPGHVAEVLAQAEALNKG
>Mature_156_residues
TVTVDHPVPDFQAPATSGQTVELSALKGQQVVIYFYPKDNTPGCTTQGQDFRDHIAQFQAANTVVLGVSRDSLKTHENFK
AKQSFPFELISDKDEAVCQLFDVIKLKKLYGKEYLGVDRSTFLIDKEGVLRQEWRGVKVPGHVAEVLAQAEALNKG

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI4505591, Length=140, Percent_Identity=35, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI32455266, Length=140, Percent_Identity=35, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI32455264, Length=140, Percent_Identity=35, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI1788825, Length=139, Percent_Identity=38.8489208633094, Blast_Score=105, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6322180, Length=93, Percent_Identity=32.258064516129, Blast_Score=63, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17738015, Length=142, Percent_Identity=36.6197183098592, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17440; Mature: 17309

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTVDHPVPDFQAPATSGQTVELSALKGQQVVIYFYPKDNTPGCTTQGQDFRDHIAQFQ
CEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
AANTVVLGVSRDSLKTHENFKAKQSFPFELISDKDEAVCQLFDVIKLKKLYGKEYLGVDR
CCCEEEEEECCHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHCCCCC
STFLIDKEGVLRQEWRGVKVPGHVAEVLAQAEALNKG
CEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TVTVDHPVPDFQAPATSGQTVELSALKGQQVVIYFYPKDNTPGCTTQGQDFRDHIAQFQ
EEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
AANTVVLGVSRDSLKTHENFKAKQSFPFELISDKDEAVCQLFDVIKLKKLYGKEYLGVDR
CCCEEEEEECCHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHCCCCC
STFLIDKEGVLRQEWRGVKVPGHVAEVLAQAEALNKG
CEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]