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The map label for this gene is hrpZ [H]

Identifier: 66044444

GI number: 66044444

Start: 1353667

End: 1354698

Strand: Direct

Name: hrpZ [H]

Synonym: Psyr_1193

Alternate gene names: 66044444

Gene position: 1353667-1354698 (Clockwise)

Preceding gene: 66044443

Following gene: 66044445

Centisome position: 22.21

GC content: 60.76

Gene sequence:

>1032_bases
ATGCAGAGTCTCAGTCTTAACAGCAGCTCGCTGCAAACCCCGGCAATGGCCCTTGTCCTGGTGCGTCCTGAAACCGAGAC
GACTGGCGCCAGTTCGTCGAGCAAGGCGCTTCAGGAAGTTGTCGTGAAGCTGGCCGAGGAACTGATGCGCAACGGTCAAC
TCGACGACAGCTCGCCATTGGGCAAACTGCTGGCCAAGTCGATGGCCGCGGATGGCAAGGCAGGCGGCGGTATCGAGGAT
GTCATCGCTGCGCTGGACAAGCTGATCCATGAAAAGCTGGGTGACAACTTCGGCGCGTCTGCGGACAACGCCTCGGGTAC
CGGACAGCAGGACCTGATGACTCAGGTGCTCAATGGCCTGGCCAAGTCGATGCTCGATGATCTTTTGACCAAGCAGGATG
GCGGGACAAGCTTCTCCGAAGACGATATGCCGATGCTGAACAAGATCGCGCAGTTCATGGATGACAATCCCGCACAGTTT
CCCAAGCCGGACTCGGGTTCCTGGGTGAACGAACTCAAGGAAGACAACTTCCTTGATGGCGACGAAACGGCTGCATTCCG
CTCGGCACTCGACATCATTGGCCAGCAACTGGGTAATCAGCAGAGTGGCACTGGCGGTCTGGCGGGGACGGGTGGAGGTC
TGGGCACTCCGAGCAGTTTTTCCAGCAACTCGTCCGGTGTGAAGGGTGACCCGCTGATCGACGCCAATACCGGTCCCGGT
GACAGCGGCACTACCAGTGGAGAAGCGGGGCAACTGATCGGCGAGCTTATCGACCGTGGCCTGCAATCGGTATTGGCCGG
TGGTGGACTGGGCACACCCGTAAACACCCCGCAGACCGGCACGGCGGCGAATGGCGGACAGTCCGCGCAGGATCTTGACC
AGTTGCTGGGCGGCTTGCTGCTCAAGGGCCTTGAAGCGACGCTCAAGGACGCCGGACAAACCGCTACCGACGTGCAGTCG
AGCGCTGCGCAAATCGCCACCTTGCTGGTCAGTACGCTGCTGCAAGGCACCCGCAATCAGGCCGCGGCCTGA

Upstream 100 bases:

>100_bases
AACCAGATCGTCGCAAGCAAGATCCGGAACTCGGTCGTCCAGTTCTGATTTCTTGAAGCCCCTTCGTGCCTGAGGGGGCT
GCTACTTTGAGGAGGTTGTG

Downstream 100 bases:

>100_bases
CCGACACCCGCCTGACGGAGAACTCACGTGACCATTTCCCACCTTGGTAATGTTAAAAGCATCTCGCCGGAACTCGGGCA
GGATGTGCCACAGGGGCTCG

Product: type III helper protein HrpZ1

Products: NA

Alternate protein names: Harpin-Psa; HrpZ-Psa protein [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MQSLSLNSSSLQTPAMALVLVRPETETTGASSSSKALQEVVVKLAEELMRNGQLDDSSPLGKLLAKSMAADGKAGGGIED
VIAALDKLIHEKLGDNFGASADNASGTGQQDLMTQVLNGLAKSMLDDLLTKQDGGTSFSEDDMPMLNKIAQFMDDNPAQF
PKPDSGSWVNELKEDNFLDGDETAAFRSALDIIGQQLGNQQSGTGGLAGTGGGLGTPSSFSSNSSGVKGDPLIDANTGPG
DSGTTSGEAGQLIGELIDRGLQSVLAGGGLGTPVNTPQTGTAANGGQSAQDLDQLLGGLLLKGLEATLKDAGQTATDVQS
SAAQIATLLVSTLLQGTRNQAAA

Sequences:

>Translated_343_residues
MQSLSLNSSSLQTPAMALVLVRPETETTGASSSSKALQEVVVKLAEELMRNGQLDDSSPLGKLLAKSMAADGKAGGGIED
VIAALDKLIHEKLGDNFGASADNASGTGQQDLMTQVLNGLAKSMLDDLLTKQDGGTSFSEDDMPMLNKIAQFMDDNPAQF
PKPDSGSWVNELKEDNFLDGDETAAFRSALDIIGQQLGNQQSGTGGLAGTGGGLGTPSSFSSNSSGVKGDPLIDANTGPG
DSGTTSGEAGQLIGELIDRGLQSVLAGGGLGTPVNTPQTGTAANGGQSAQDLDQLLGGLLLKGLEATLKDAGQTATDVQS
SAAQIATLLVSTLLQGTRNQAAA
>Mature_343_residues
MQSLSLNSSSLQTPAMALVLVRPETETTGASSSSKALQEVVVKLAEELMRNGQLDDSSPLGKLLAKSMAADGKAGGGIED
VIAALDKLIHEKLGDNFGASADNASGTGQQDLMTQVLNGLAKSMLDDLLTKQDGGTSFSEDDMPMLNKIAQFMDDNPAQF
PKPDSGSWVNELKEDNFLDGDETAAFRSALDIIGQQLGNQQSGTGGLAGTGGGLGTPSSFSSNSSGVKGDPLIDANTGPG
DSGTTSGEAGQLIGELIDRGLQSVLAGGGLGTPVNTPQTGTAANGGQSAQDLDQLLGGLLLKGLEATLKDAGQTATDVQS
SAAQIATLLVSTLLQGTRNQAAA

Specific function: Harpins are proteins able to elicit hypersensitive response (HR) in non-host plants and are required for pathogenicity in host plants. HrpZ forms ion-conducting pores permeable for cations. Such pore-forming activity may allow nutrient release and/or deli

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted. Host cell membrane (Probable). Note=Secreted via type III secretion system (TTSS), delivered into the host intercellular space. HrpZ travels through the hrp pilus and it is secreted only from the pilus tip [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the harpin hrpZ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006961 [H]

Pfam domain/function: PF04877 HrpZ [H]

EC number: NA

Molecular weight: Translated: 34721; Mature: 34721

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLSLNSSSLQTPAMALVLVRPETETTGASSSSKALQEVVVKLAEELMRNGQLDDSSPL
CCCCCCCCHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
GKLLAKSMAADGKAGGGIEDVIAALDKLIHEKLGDNFGASADNASGTGQQDLMTQVLNGL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
AKSMLDDLLTKQDGGTSFSEDDMPMLNKIAQFMDDNPAQFPKPDSGSWVNELKEDNFLDG
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCC
DETAAFRSALDIIGQQLGNQQSGTGGLAGTGGGLGTPSSFSSNSSGVKGDPLIDANTGPG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
DSGTTSGEAGQLIGELIDRGLQSVLAGGGLGTPVNTPQTGTAANGGQSAQDLDQLLGGLL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LKGLEATLKDAGQTATDVQSSAAQIATLLVSTLLQGTRNQAAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQSLSLNSSSLQTPAMALVLVRPETETTGASSSSKALQEVVVKLAEELMRNGQLDDSSPL
CCCCCCCCHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
GKLLAKSMAADGKAGGGIEDVIAALDKLIHEKLGDNFGASADNASGTGQQDLMTQVLNGL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
AKSMLDDLLTKQDGGTSFSEDDMPMLNKIAQFMDDNPAQFPKPDSGSWVNELKEDNFLDG
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCC
DETAAFRSALDIIGQQLGNQQSGTGGLAGTGGGLGTPSSFSSNSSGVKGDPLIDANTGPG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
DSGTTSGEAGQLIGELIDRGLQSVLAGGGLGTPVNTPQTGTAANGGQSAQDLDQLLGGLL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LKGLEATLKDAGQTATDVQSSAAQIATLLVSTLLQGTRNQAAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11392485 [H]