Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 66044349

GI number: 66044349

Start: 1242184

End: 1244301

Strand: Reverse

Name: yciR [C]

Synonym: Psyr_1098

Alternate gene names: 66044349

Gene position: 1244301-1242184 (Counterclockwise)

Preceding gene: 66044350

Following gene: 66044348

Centisome position: 20.42

GC content: 60.58

Gene sequence:

>2118_bases
ATGACCGAGAGCGCCGCGACCATCCTGATTATCGATGACGACGTCCATGTCCGGGACCTGCTGGAGGTTCTCTTGCAGAA
CCAGGGTTACCGGACATTGACGGCGGAATCAGGCGAGCTGGCGCTGGCCATGGTCAAACGACAGGCACCCGACCTGATCC
TGCTGGACATCATGATGCCGGGCATGGACGGCTATGAAGTCGCCAGCCAGCTCAAGGCCGAAAAGGGCACCGCCAATATA
CCGATCATCATGCTCTCGGCACTCGACGACCAGAGTTCCCGTCTTTCAGGGCTGGAAGCGGGGGCCGAGGAATACCTCAA
CAAGCCTGTGGACAGCGCCGAACTGTGGCTGCGCGTGCGTAACCTGCTGCGTCTCAAGGCGTTCGGCGACTACCTGAAGA
GCCACAGCCTGATCCTCGAAGATCAGTTGCAGCAGCGCACCATCGATCTCGAGCGTTTTCGCACGGTAATGGACGCCTCC
GAAGACGCGATCTTCCTGATCAACCGCAACACCATGAGCCTGATCGAATTCAACCGCCGGGCCTGCCAGTTGCTGGGCTA
CACCGCCGAGGAGCTGTCGCACAAGACACCTGCGGAACTGGGCGAGACGTCCATGGAGCAGCTTGAGGTCGTGTATGACC
AGATCATCGCCGGCAAAGGCCCCAGCGAACCGCTGGAAACCCAGATTCGCGACAAGAGCGGCCGGGATGTCGAGGTCGAA
ATCCATCGCCAGGCCTACCGGACCGGCGAGGACTGGGTCATCGTCGGCATCGTGCGCGACATCACCCGGCGCAAGGAAAG
CGACCAGCGCCTGCTGACCATGGCCCACTACGACACGCTGACCGGCCTGCCCAACCGGGATCTGTTTTTTACCAGCCTGC
AAATGGGCATGACCCAGGCGGCCATCAGTCGCTGGAAGCTGGCGGCATTGACGGTCAATATCGACGGTTTCAAGAACATC
AACGAAACCTGGGGGCATGTGCTGGGCGATGAGGTGCTGCTGGAAGTCAGCCGCCGACTGTCGAACTGCCTGAATGCCAG
CGACACCCTCGGCCGCGTGGACGGCGATCAGTTCGCCCTGATTCTGATGCTTCGTCCCGGCCAGGCGGATACCCGGCAAA
CGCTCGAACGCATCCGCAACGCATTGCGAGCGCCCTTCCGCATAGAAGGCCAGAGCCTGGTCATGACCGCCAGCATCGGC
ATTGCCCTGTACCCGGAGGATGGCGAAGACTCGCGCGAGCTGATCAGACATGCCTACACCGCCATGAACAGCGCTCGAAA
GATCGGCCCGGACAACTACCGGTTCTATACGCCGCAGATGAACGCCGACGTTTCGGCCCGTCTGGACCTTGAGGCCGCGC
TGCGCGAAGCGGTGCGCAACCAGGCCTTCGAAATCGTCTACCAACCCAAGCTGGACCTGAACAACGACCGTATCTGCGGA
CTTGAGGCGCTGTTGCGCTGGCCACGCCCTGGTCATCCAGGCGTTTCGCCTGCCGTATTTGTCCCCGTACTGGAAAGCCT
CGGCCTGATCGGTGAAGTCGGCAACTGGGTGGTCGACAGCGTCTGCGCCCAGATTGCGCGCTGGCAACGCTCCGGATTGG
GCTCGTTTCAGGTCGCGGTCAACATCTCCGGGCAACAGATTTCCAGCAGCAGCCTGGTTGCCGACATCCGTCAGGCCCTC
GAAAAACACAATGTTGCGCCGCAGTGGCTTGAGGTCGAGCTGACAGAAAGTTCGTTGATGGAAAATACCGCACACACCAT
CGCCACCCTGGGAGCACTGCGAGCCAACCGCGTGAGTATTTCCATCGACGACTTCGGCACCGGCTATTCAAGCCTGGCGT
ACCTGCGCCGCTTCCCTATCGACAAGCTGAAAATCGACATCGCATTCATTCGCGAGGTGACCAGCAACCCACAGGACGCG
GCCATCGCCAGAGCCATCATCGAGCTGGCTCACAGCCTCGACCTGCAGGTGATCGCCGAAGGGGTTGAAACCCCAGAGCA
ACTGGCGTTCCTGCGCGAAAACCATTGCGATCAAATTCAGGGCTATCTGATCAGCAAGCCACTGCCGCTTGAAGAGCTCG
AAACGTTTTTGTGCTCACCGGCAAGCCGCGTCGGGTAA

Upstream 100 bases:

>100_bases
TTATGTCATCAAGCCGTTGCGCTACAAGGAGCTGTACCGGGTCATCGACACCCTGCTGGAAAAAAATCTGCCTCAACAGC
CCATTACCTGAGCATTCGAT

Downstream 100 bases:

>100_bases
CTGCCGACGCGCTAGCGACGGGTTCCGGGTAATAGCCAATGGTAGCCGGGTGCAATCATGCCGGCCCGATCGTAACGAAA
ACGCTCCACCGTAACGATTT

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MTESAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMPGMDGYEVASQLKAEKGTANI
PIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDAS
EDAIFLINRNTMSLIEFNRRACQLLGYTAEELSHKTPAELGETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSGRDVEVE
IHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMGMTQAAISRWKLAALTVNIDGFKNI
NETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDGDQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIG
IALYPEDGEDSRELIRHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNNDRICG
LEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGSFQVAVNISGQQISSSSLVADIRQAL
EKHNVAPQWLEVELTESSLMENTAHTIATLGALRANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDA
AIARAIIELAHSLDLQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFLCSPASRVG

Sequences:

>Translated_705_residues
MTESAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMPGMDGYEVASQLKAEKGTANI
PIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDAS
EDAIFLINRNTMSLIEFNRRACQLLGYTAEELSHKTPAELGETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSGRDVEVE
IHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMGMTQAAISRWKLAALTVNIDGFKNI
NETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDGDQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIG
IALYPEDGEDSRELIRHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNNDRICG
LEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGSFQVAVNISGQQISSSSLVADIRQAL
EKHNVAPQWLEVELTESSLMENTAHTIATLGALRANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDA
AIARAIIELAHSLDLQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFLCSPASRVG
>Mature_704_residues
TESAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMPGMDGYEVASQLKAEKGTANIP
IIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASE
DAIFLINRNTMSLIEFNRRACQLLGYTAEELSHKTPAELGETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSGRDVEVEI
HRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMGMTQAAISRWKLAALTVNIDGFKNIN
ETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDGDQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGI
ALYPEDGEDSRELIRHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNNDRICGL
EALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGSFQVAVNISGQQISSSSLVADIRQALE
KHNVAPQWLEVELTESSLMENTAHTIATLGALRANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAA
IARAIIELAHSLDLQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFLCSPASRVG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=37.9310344827586, Blast_Score=301, Evalue=8e-83,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=33.9449541284404, Blast_Score=268, Evalue=6e-73,
Organism=Escherichia coli, GI226510982, Length=444, Percent_Identity=29.954954954955, Blast_Score=180, Evalue=3e-46,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=36.4406779661017, Blast_Score=158, Evalue=9e-40,
Organism=Escherichia coli, GI1788502, Length=259, Percent_Identity=32.4324324324324, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=32.1705426356589, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=32.0833333333333, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=31.3492063492063, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1788849, Length=440, Percent_Identity=26.8181818181818, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1787055, Length=450, Percent_Identity=24.2222222222222, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1786507, Length=271, Percent_Identity=28.4132841328413, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=198, Percent_Identity=30.3030303030303, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1788381, Length=559, Percent_Identity=23.7924865831843, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=276, Percent_Identity=29.7101449275362, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1786599, Length=120, Percent_Identity=35.8333333333333, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI1789809, Length=120, Percent_Identity=36.6666666666667, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=32.1637426900585, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=33.5443037974684, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1790860, Length=123, Percent_Identity=34.9593495934959, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788394, Length=124, Percent_Identity=35.4838709677419, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=31.3609467455621, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=29.7619047619048, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1786911, Length=118, Percent_Identity=35.5932203389831, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787410, Length=155, Percent_Identity=30.3225806451613, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1790863, Length=116, Percent_Identity=31.8965517241379, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082012, Length=117, Percent_Identity=37.6068376068376, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788550, Length=126, Percent_Identity=32.5396825396825, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786784, Length=138, Percent_Identity=35.5072463768116, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1790437, Length=111, Percent_Identity=36.036036036036, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=29.6969696969697, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI2367329, Length=117, Percent_Identity=41.8803418803419, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1790299, Length=104, Percent_Identity=35.5769230769231, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787229, Length=116, Percent_Identity=34.4827586206897, Blast_Score=67, Evalue=6e-12,
Organism=Escherichia coli, GI145693140, Length=107, Percent_Identity=33.6448598130841, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1790552, Length=117, Percent_Identity=31.6239316239316, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87082007, Length=139, Percent_Identity=33.0935251798561, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1788905, Length=116, Percent_Identity=31.8965517241379, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 78647; Mature: 78515

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMP
CCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCEEEEEEECC
GMDGYEVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVR
CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCHHHHHHHHH
NLLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
ACQLLGYTAEELSHKTPAELGETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSGRDVEVE
HHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEE
IHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMGMTQA
EEHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHH
AISRWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDGDQFAL
HHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEE
ILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELIRHAYT
EEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCEEEECCCCCCHHHHHHHHHH
AMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNNDRICG
HHHHHHCCCCCCCEEECCCCCCCCCEECCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEC
LEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGSFQVAV
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALRANRVSI
EECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEE
SIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLDLQVIAE
EECCCCCCHHHHHHHHHCCCHHHEEHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH
GVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFLCSPASRVG
HCCCHHHHHHHHHCCHHHHCCEEECCCCCHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
TESAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMP
CCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCEEEEEEECC
GMDGYEVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVR
CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHCCCCCHHHHHHHHH
NLLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
ACQLLGYTAEELSHKTPAELGETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSGRDVEVE
HHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEE
IHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMGMTQA
EEHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHH
AISRWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDGDQFAL
HHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEE
ILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELIRHAYT
EEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCEEEECCCCCCHHHHHHHHHH
AMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNNDRICG
HHHHHHCCCCCCCEEECCCCCCCCCEECCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEC
LEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGSFQVAV
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALRANRVSI
EECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEE
SIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLDLQVIAE
EECCCCCCHHHHHHHHHCCCHHHEEHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH
GVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFLCSPASRVG
HCCCHHHHHHHHHCCHHHHCCEEECCCCCHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]