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The map label for this gene is algL [H]

Identifier: 66044309

GI number: 66044309

Start: 1194797

End: 1195933

Strand: Reverse

Name: algL [H]

Synonym: Psyr_1056

Alternate gene names: 66044309

Gene position: 1195933-1194797 (Counterclockwise)

Preceding gene: 66044310

Following gene: 66044308

Centisome position: 19.63

GC content: 58.66

Gene sequence:

>1137_bases
ATGCAGACTCCTAAACTGATTCGCCCTACCCTGCTGTCGATGGCAATCCTGTCATCGATGGCCTGGGCCACGGGCGCATC
CGCCGCACTGGTTCCACCCAAGGGCTATGACGCCCCGATCGAAAAAATCAAGACTGGCGATCACAGCTTCAGTTGTGAAG
CCATTCCAAAGCCCTACACCGACAAGCTGGTGTTCCGCAGCAAGTACGAGGGTTCGGACAAGGCACGCGCAACGCTCAAT
GCGGTATCCGAAGAAGCGTTCCGTGATGCGACCAAGGACATCACCACCCTTGAGCGTGGCGTCAGCAAAGTCGTGATGCA
GTACATGCGCGACGGTCGTCCGGAACAACTCGATTGCGCGCTGAACATGATGACCACCTGGGCCAAGGCCGATGCGCTGG
AGTCGCGCGAGTTCAACCACACCGGTAAATCCATGCGCAAATGGGCTCTGGGCAGCATGTCCTCCGCCTACCTGCGCCTG
AAGTTCTCCGAGTCGCACCCGCTGGCCAATCGTCAGCAGGACGCGAAGATCATCGAAGCCTGGTTCAGCAAGCTGGCCGA
TCAGGTGGTCAGCGACTGGAGCAATCTGCCGCTGGACAAGATCAACAACCACTCGTACTGGGCTGCCTGGTCAGTGATGG
CAACCGCTGTCGCCACCAATCGTCAGGACCTGTTCGACTGGGCCGTGAAGGAATACAAGGTCGCTGCCAATCAAGTGGAC
AAGGACGGTTTCCTGCCCAACGAGATGAAGCGCCGTCAGCGTGCACTGTCGTATCACAACTACGCATTGCCACCGCTCGC
GATGATTGCCAGCTTCGCCCAGGCCAACGGCGTGGACCTGCGTCCGGAAAACAATGGCGCCCTGAAGCGTCTGGGTGACC
GGGTTCTGGCCGGCGTCAAAGACCCTTCGATATTCGCTGAACACAACGGCGAGAAACAGGACATGACGGACCTGAAGAAA
GATCCGAAATTCGCCTGGCTCGAACCGTACTGCTCGCTCTACACCTGCAGCCCGGATGTGCTGGAAGAGAAACACGAAAA
GCAGCCGTTCAAGACGTTCCGCCTGGGCGGTGACCTGACCAAGGTCTACGACCCCTCGCACGAGAAAGGCGACAAGGGCG
ATAACGACGGTTCGTGA

Upstream 100 bases:

>100_bases
CAGGCACGGCACCACAAAAAGTCGAAGCCAAAGTATGCAAACGCAACGTGTTCCCGAGCGCTGCGACACACACCGCTCAA
GCCGGACTATGAGGTGACTT

Downstream 100 bases:

>100_bases
TTCACAGAGTTCTTTGTGGGAGCGAGCTTGCTCGCGAAGAGGCACGCCCAGGCGCTAAATCCGTAAGACCGGACCTCGCC
TGAGCTGCTTCACCGACAAG

Product: poly(beta-D-mannuronate) lyase

Products: NA

Alternate protein names: Poly(beta-D-mannuronate) lyase; Poly(mana) alginate lyase [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MQTPKLIRPTLLSMAILSSMAWATGASAALVPPKGYDAPIEKIKTGDHSFSCEAIPKPYTDKLVFRSKYEGSDKARATLN
AVSEEAFRDATKDITTLERGVSKVVMQYMRDGRPEQLDCALNMMTTWAKADALESREFNHTGKSMRKWALGSMSSAYLRL
KFSESHPLANRQQDAKIIEAWFSKLADQVVSDWSNLPLDKINNHSYWAAWSVMATAVATNRQDLFDWAVKEYKVAANQVD
KDGFLPNEMKRRQRALSYHNYALPPLAMIASFAQANGVDLRPENNGALKRLGDRVLAGVKDPSIFAEHNGEKQDMTDLKK
DPKFAWLEPYCSLYTCSPDVLEEKHEKQPFKTFRLGGDLTKVYDPSHEKGDKGDNDGS

Sequences:

>Translated_378_residues
MQTPKLIRPTLLSMAILSSMAWATGASAALVPPKGYDAPIEKIKTGDHSFSCEAIPKPYTDKLVFRSKYEGSDKARATLN
AVSEEAFRDATKDITTLERGVSKVVMQYMRDGRPEQLDCALNMMTTWAKADALESREFNHTGKSMRKWALGSMSSAYLRL
KFSESHPLANRQQDAKIIEAWFSKLADQVVSDWSNLPLDKINNHSYWAAWSVMATAVATNRQDLFDWAVKEYKVAANQVD
KDGFLPNEMKRRQRALSYHNYALPPLAMIASFAQANGVDLRPENNGALKRLGDRVLAGVKDPSIFAEHNGEKQDMTDLKK
DPKFAWLEPYCSLYTCSPDVLEEKHEKQPFKTFRLGGDLTKVYDPSHEKGDKGDNDGS
>Mature_378_residues
MQTPKLIRPTLLSMAILSSMAWATGASAALVPPKGYDAPIEKIKTGDHSFSCEAIPKPYTDKLVFRSKYEGSDKARATLN
AVSEEAFRDATKDITTLERGVSKVVMQYMRDGRPEQLDCALNMMTTWAKADALESREFNHTGKSMRKWALGSMSSAYLRL
KFSESHPLANRQQDAKIIEAWFSKLADQVVSDWSNLPLDKINNHSYWAAWSVMATAVATNRQDLFDWAVKEYKVAANQVD
KDGFLPNEMKRRQRALSYHNYALPPLAMIASFAQANGVDLRPENNGALKRLGDRVLAGVKDPSIFAEHNGEKQDMTDLKK
DPKFAWLEPYCSLYTCSPDVLEEKHEKQPFKTFRLGGDLTKVYDPSHEKGDKGDNDGS

Specific function: Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022859
- InterPro:   IPR008397
- InterPro:   IPR008929 [H]

Pfam domain/function: NA

EC number: =4.2.2.3 [H]

Molecular weight: Translated: 42439; Mature: 42439

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTPKLIRPTLLSMAILSSMAWATGASAALVPPKGYDAPIEKIKTGDHSFSCEAIPKPYT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHCCCCCCEECCCCCCCCC
DKLVFRSKYEGSDKARATLNAVSEEAFRDATKDITTLERGVSKVVMQYMRDGRPEQLDCA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LNMMTTWAKADALESREFNHTGKSMRKWALGSMSSAYLRLKFSESHPLANRQQDAKIIEA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
WFSKLADQVVSDWSNLPLDKINNHSYWAAWSVMATAVATNRQDLFDWAVKEYKVAANQVD
HHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
KDGFLPNEMKRRQRALSYHNYALPPLAMIASFAQANGVDLRPENNGALKRLGDRVLAGVK
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
DPSIFAEHNGEKQDMTDLKKDPKFAWLEPYCSLYTCSPDVLEEKHEKQPFKTFRLGGDLT
CCCCHHCCCCCHHHHHHHHCCCCCEEECCCCCEEECCHHHHHHHHHCCCHHHHHCCCCHH
KVYDPSHEKGDKGDNDGS
HHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQTPKLIRPTLLSMAILSSMAWATGASAALVPPKGYDAPIEKIKTGDHSFSCEAIPKPYT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHCCCCCCEECCCCCCCCC
DKLVFRSKYEGSDKARATLNAVSEEAFRDATKDITTLERGVSKVVMQYMRDGRPEQLDCA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LNMMTTWAKADALESREFNHTGKSMRKWALGSMSSAYLRLKFSESHPLANRQQDAKIIEA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
WFSKLADQVVSDWSNLPLDKINNHSYWAAWSVMATAVATNRQDLFDWAVKEYKVAANQVD
HHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
KDGFLPNEMKRRQRALSYHNYALPPLAMIASFAQANGVDLRPENNGALKRLGDRVLAGVK
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
DPSIFAEHNGEKQDMTDLKKDPKFAWLEPYCSLYTCSPDVLEEKHEKQPFKTFRLGGDLT
CCCCHHCCCCCHHHHHHHHCCCCCEEECCCCCEEECCHHHHHHHHHCCCHHHHHCCCCHH
KVYDPSHEKGDKGDNDGS
HHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]