| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yfeH [C]
Identifier: 66043915
GI number: 66043915
Start: 735983
End: 737011
Strand: Reverse
Name: yfeH [C]
Synonym: Psyr_0648
Alternate gene names: 66043915
Gene position: 737011-735983 (Counterclockwise)
Preceding gene: 66043920
Following gene: 66043911
Centisome position: 12.09
GC content: 61.03
Gene sequence:
>1029_bases ATGCAATCACTCAAACACTTCAAGCGCGTCGCCACTGACTGGTTCCTCTGGGGCATGGTGCTGGCGACGGTACTCGCCTA TTTCTTCCCGCGTTTCGGGGCTACCGGCGGCAGCATGCACGCTGAGTACGTCATCAAGGTCGGCGTGTTCGTAGTGTTCT TTCTGCATGGCGTGAATCTGTCCAGCGAGCAGATCAAGAAAGGCCTGACCAACTGGCGCTTGCACGTGATGATCCAGGTC TTCACCTTCGTGGTGTTCCCGCTGATCTGGCTGGCGTGCAACAAGCTGCTGGGCTCGCAGGTGCCAGCGCTGCTGATGCT GGGCTTCCTCTACCTGTGCGCCCTGCCCTCGACCATTTCCTCCTCTGTGGCGCTGACCGGCAGCGCAGGCGGCAATGTCC CGGCAGCGATTCTCAACGCCAGCATGTCCAGTGTCATCGGGATTTTCATCACCCCGTGGCTGGTGAGCCTGGTGGTCGGC ACCGGCGCTGGCGGGATCGATCTGGGCGATACGCTGCTCGACCTGTGCGCCATGCTCCTGCTGCCACTGGTGCTTGGCCA GTTAATGCGGCCGCTGCTGGGCAAGTTCTTCGCCCGTCACAAGAAATACACCAACCTGATCGACAAGCTGGTGATTCTGC TGCTGGTGTATGCGGCGTTCTGCAACTCGATGATCTCCGGCATGTGGCAAAGCCAGGGCAACAGCGTGATCCTGACCGCG TTCATCGGCACCGCGCTGTTGCTGGCGGTGATCCTGTTGATGACCACCCGCACGGCGCGGGTGCTCAAGTTCGATCATGC CGACAAGGTCGCGGCGGTGTTCTGCGCCACCAAGAAGTCCCTTGCTGCAGGCGCGCCGATGGCTGCGCTGATTTTCGGCA GCAATCCGGGGCTTGGCCTGATTCTGTTGCCGATCATGATCTACCACCCGATGCAGCTGATCGTGTGCTCGATCATCGCC GAGAGCTACGCCAGTCGTCATCGCCAGCAGCTTTCGGCCGCCGCCCTGGAAGAAGCTCAAGCCGCGTGA
Upstream 100 bases:
>100_bases TCCGTTACTCGGCATCTTATGGCCTTATGTCGCAAGACGGCTATGGAGCAACAGAGTAGCCTGCACGCCTCTCTGTTTAC AAAAGTTCTCCGGACCCCGT
Downstream 100 bases:
>100_bases TTGCGGCTTACATCAGCGCGTCATCATCCAGCGTGACGCGCGCGTAGAAGACGATCGCCACGGTGGGGATCAGTGCGGAA TAACCCGGCCGCAGCGCAGT
Product: transporter, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MQSLKHFKRVATDWFLWGMVLATVLAYFFPRFGATGGSMHAEYVIKVGVFVVFFLHGVNLSSEQIKKGLTNWRLHVMIQV FTFVVFPLIWLACNKLLGSQVPALLMLGFLYLCALPSTISSSVALTGSAGGNVPAAILNASMSSVIGIFITPWLVSLVVG TGAGGIDLGDTLLDLCAMLLLPLVLGQLMRPLLGKFFARHKKYTNLIDKLVILLLVYAAFCNSMISGMWQSQGNSVILTA FIGTALLLAVILLMTTRTARVLKFDHADKVAAVFCATKKSLAAGAPMAALIFGSNPGLGLILLPIMIYHPMQLIVCSIIA ESYASRHRQQLSAAALEEAQAA
Sequences:
>Translated_342_residues MQSLKHFKRVATDWFLWGMVLATVLAYFFPRFGATGGSMHAEYVIKVGVFVVFFLHGVNLSSEQIKKGLTNWRLHVMIQV FTFVVFPLIWLACNKLLGSQVPALLMLGFLYLCALPSTISSSVALTGSAGGNVPAAILNASMSSVIGIFITPWLVSLVVG TGAGGIDLGDTLLDLCAMLLLPLVLGQLMRPLLGKFFARHKKYTNLIDKLVILLLVYAAFCNSMISGMWQSQGNSVILTA FIGTALLLAVILLMTTRTARVLKFDHADKVAAVFCATKKSLAAGAPMAALIFGSNPGLGLILLPIMIYHPMQLIVCSIIA ESYASRHRQQLSAAALEEAQAA >Mature_342_residues MQSLKHFKRVATDWFLWGMVLATVLAYFFPRFGATGGSMHAEYVIKVGVFVVFFLHGVNLSSEQIKKGLTNWRLHVMIQV FTFVVFPLIWLACNKLLGSQVPALLMLGFLYLCALPSTISSSVALTGSAGGNVPAAILNASMSSVIGIFITPWLVSLVVG TGAGGIDLGDTLLDLCAMLLLPLVLGQLMRPLLGKFFARHKKYTNLIDKLVILLLVYAAFCNSMISGMWQSQGNSVILTA FIGTALLLAVILLMTTRTARVLKFDHADKVAAVFCATKKSLAAGAPMAALIFGSNPGLGLILLPIMIYHPMQLIVCSIIA ESYASRHRQQLSAAALEEAQAA
Specific function: Unknown
COG id: COG0385
COG function: function code R; Predicted Na+-dependent transporter
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfeH [H]
Homologues:
Organism=Homo sapiens, GI71725371, Length=327, Percent_Identity=32.1100917431193, Blast_Score=164, Evalue=1e-40, Organism=Homo sapiens, GI14149785, Length=143, Percent_Identity=34.2657342657343, Blast_Score=86, Evalue=5e-17, Organism=Escherichia coli, GI1788749, Length=333, Percent_Identity=39.6396396396396, Blast_Score=209, Evalue=3e-55, Organism=Saccharomyces cerevisiae, GI6323677, Length=381, Percent_Identity=23.3595800524934, Blast_Score=89, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002657 - InterPro: IPR016833 [H]
Pfam domain/function: PF01758 SBF [H]
EC number: NA
Molecular weight: Translated: 36850; Mature: 36850
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: PS00131 CARBOXYPEPT_SER_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSLKHFKRVATDWFLWGMVLATVLAYFFPRFGATGGSMHAEYVIKVGVFVVFFLHGVNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC SSEQIKKGLTNWRLHVMIQVFTFVVFPLIWLACNKLLGSQVPALLMLGFLYLCALPSTIS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHC SSVALTGSAGGNVPAAILNASMSSVIGIFITPWLVSLVVGTGAGGIDLGDTLLDLCAMLL CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LPLVLGQLMRPLLGKFFARHKKYTNLIDKLVILLLVYAAFCNSMISGMWQSQGNSVILTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH FIGTALLLAVILLMTTRTARVLKFDHADKVAAVFCATKKSLAAGAPMAALIFGSNPGLGL HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH ILLPIMIYHPMQLIVCSIIAESYASRHRQQLSAAALEEAQAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQSLKHFKRVATDWFLWGMVLATVLAYFFPRFGATGGSMHAEYVIKVGVFVVFFLHGVNL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC SSEQIKKGLTNWRLHVMIQVFTFVVFPLIWLACNKLLGSQVPALLMLGFLYLCALPSTIS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHC SSVALTGSAGGNVPAAILNASMSSVIGIFITPWLVSLVVGTGAGGIDLGDTLLDLCAMLL CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LPLVLGQLMRPLLGKFFARHKKYTNLIDKLVILLLVYAAFCNSMISGMWQSQGNSVILTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH FIGTALLLAVILLMTTRTARVLKFDHADKVAAVFCATKKSLAAGAPMAALIFGSNPGLGL HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH ILLPIMIYHPMQLIVCSIIAESYASRHRQQLSAAALEEAQAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 1849605 [H]