Click here to switch to the map view.

The map label for this gene is dedA [H]

Identifier: 66043893

GI number: 66043893

Start: 715229

End: 715876

Strand: Reverse

Name: dedA [H]

Synonym: Psyr_0626

Alternate gene names: 66043893

Gene position: 715876-715229 (Counterclockwise)

Preceding gene: 66043894

Following gene: 66043892

Centisome position: 11.75

GC content: 60.96

Gene sequence:

>648_bases
ATGGAATTCAACCCGCTCGACCTTATTCTGCATCTCGACGTTTACCTTGACCTGTTGGTGACCAACTACGGTACATGGGT
CTATGCGATTCTGTTTTTGGTGATTTTCTGCGAGACCGGACTGGTGATCATGCCCTTCCTGCCGGGCGACTCGCTGCTGT
TCATCGCTGGCGCCGTGGCTGCTGGCGGCGGCATGGACCCGGTCCTGCTGGCCGGGTTGCTGATGCTCGCAGCGATTCTG
GGCGACAGCACCAACTACGTGATTGGCCGCACGGTCGGCGAAAAACTGTTCAGCAATTCGTCATCGCGAATCTTCCGCCG
CGACTACCTGCTGCGCACCCAGAATTTCTACGCACGCCACGGCGGCAAGACCGTCACGCTGGCGCGCTTCCTGCCGATTA
TCCGCACCTTCGCGCCCTTCGTCGCGGGCGTCGGCAGAATGTCCTATCCGCGCTTCGTGGGCTTCAGCGTGCTGGGCTCG
GTGCTGTGGGTCGGCAGCCTGGTGACACTGGGCTTCTTCTTCGGCAACGTGCCATTCATCAAGCACAACCTGACCTTTCT
GGTACTGGCAATCATCCTGCTGTCGCTGGTGCCGATGGTCATTGGCGTAGTGCGCAGCCGCAGCGCGCGTCCGGTCGACG
CGCGCTGA

Upstream 100 bases:

>100_bases
TTTATTCCAAAACCCCTTCTGCGCATTCTGCTTCTATAATGCCGCGCAGTCGTTTCTTCCGCATGCGACCCCGGACAGGG
TTCTCGCCTCAGGTGCCTTA

Downstream 100 bases:

>100_bases
ATCATGTGGTCATTCAGCCACTGGCGCAGGCAGCGCACGCTGGCCCGACACCCGGTTGCTGAAGAGCTATGGCAGAACGT
CTGCGCACGTCTGCCTATCC

Product: hypothetical protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MEFNPLDLILHLDVYLDLLVTNYGTWVYAILFLVIFCETGLVIMPFLPGDSLLFIAGAVAAGGGMDPVLLAGLLMLAAIL
GDSTNYVIGRTVGEKLFSNSSSRIFRRDYLLRTQNFYARHGGKTVTLARFLPIIRTFAPFVAGVGRMSYPRFVGFSVLGS
VLWVGSLVTLGFFFGNVPFIKHNLTFLVLAIILLSLVPMVIGVVRSRSARPVDAR

Sequences:

>Translated_215_residues
MEFNPLDLILHLDVYLDLLVTNYGTWVYAILFLVIFCETGLVIMPFLPGDSLLFIAGAVAAGGGMDPVLLAGLLMLAAIL
GDSTNYVIGRTVGEKLFSNSSSRIFRRDYLLRTQNFYARHGGKTVTLARFLPIIRTFAPFVAGVGRMSYPRFVGFSVLGS
VLWVGSLVTLGFFFGNVPFIKHNLTFLVLAIILLSLVPMVIGVVRSRSARPVDAR
>Mature_215_residues
MEFNPLDLILHLDVYLDLLVTNYGTWVYAILFLVIFCETGLVIMPFLPGDSLLFIAGAVAAGGGMDPVLLAGLLMLAAIL
GDSTNYVIGRTVGEKLFSNSSSRIFRRDYLLRTQNFYARHGGKTVTLARFLPIIRTFAPFVAGVGRMSYPRFVGFSVLGS
VLWVGSLVTLGFFFGNVPFIKHNLTFLVLAIILLSLVPMVIGVVRSRSARPVDAR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=203, Percent_Identity=55.6650246305419, Blast_Score=242, Evalue=1e-65,
Organism=Escherichia coli, GI1789384, Length=167, Percent_Identity=34.7305389221557, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789481, Length=158, Percent_Identity=34.1772151898734, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23580; Mature: 23580

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFNPLDLILHLDVYLDLLVTNYGTWVYAILFLVIFCETGLVIMPFLPGDSLLFIAGAVA
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
AGGGMDPVLLAGLLMLAAILGDSTNYVIGRTVGEKLFSNSSSRIFRRDYLLRTQNFYARH
CCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GGKTVTLARFLPIIRTFAPFVAGVGRMSYPRFVGFSVLGSVLWVGSLVTLGFFFGNVPFI
CCCEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KHNLTFLVLAIILLSLVPMVIGVVRSRSARPVDAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEFNPLDLILHLDVYLDLLVTNYGTWVYAILFLVIFCETGLVIMPFLPGDSLLFIAGAVA
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
AGGGMDPVLLAGLLMLAAILGDSTNYVIGRTVGEKLFSNSSSRIFRRDYLLRTQNFYARH
CCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GGKTVTLARFLPIIRTFAPFVAGVGRMSYPRFVGFSVLGSVLWVGSLVTLGFFFGNVPFI
CCCEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KHNLTFLVLAIILLSLVPMVIGVVRSRSARPVDAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]