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The map label for this gene is sigK [H]

Identifier: 66043631

GI number: 66043631

Start: 387282

End: 387848

Strand: Reverse

Name: sigK [H]

Synonym: Psyr_0362

Alternate gene names: 66043631

Gene position: 387848-387282 (Counterclockwise)

Preceding gene: 66043632

Following gene: 66043630

Centisome position: 6.36

GC content: 58.02

Gene sequence:

>567_bases
TTGTCTTCGCACGAATCTCTCTTTGATTACGAAGCGACGTTGCAGGCCTGCGCTCGCGGTGAAAAACAGGCCTTGCAGCG
TCTCTATCAACAGGAAAGCGCCCGACTGCTCGGTGTCGCTCAGCGCTTGGTGCGTGACCGCGCACTGGCCGAGGACATCG
TGCATGACGCGTTCCTGAAAATCTGGTCCCACGCGGCCAGCTTCGATGCCTCGCGTGGTTCGGCACGTGGCTGGATCTTC
AGCGTGACTCGCCACCTGGCGCTCAACACGTTGCGCAACACGACTCGCGAGGTGCGTGTCGAAGACGACGGCAGTGAAGA
TCATCATGAACAGGCGACACTGGAAGGCTGGCAGGAAATCGGCGATGCCTTCGATTGGCAGGTCAATCCAGGACGGATCA
CGTCATGCCTGGAGCAACTGGAGCCGGTAAGACGCAACTGTATTTTTCACGCTTACGTAGACGGTTATTCGCATCAGGAA
ATCGCGCAGAAAATTGGCGCGCCATTGGGTACGGTCAAAGCCTGGATCAAGCGCAGCCTGACGGCTTTGCGGGAGTGCAT
GGGATGA

Upstream 100 bases:

>100_bases
ATGCGCTTAATCAGGTGACCGTGCAACAGTAGGCTATGCTGCTGCGCGGGAGCCTCGTGATGTCAACGAGGCAGTAGTCT
TCCATTGATGGCGGATCATC

Downstream 100 bases:

>100_bases
CCCGGCCTTTAGACGACAACATTCACGAGCTGGCTGGCGAGTATGTACTCGGCACCCTCTCGGGGCAGAAGCGGCTCGAC
GTACAGCGTCGCCTGTCGCG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSSHESLFDYEATLQACARGEKQALQRLYQQESARLLGVAQRLVRDRALAEDIVHDAFLKIWSHAASFDASRGSARGWIF
SVTRHLALNTLRNTTREVRVEDDGSEDHHEQATLEGWQEIGDAFDWQVNPGRITSCLEQLEPVRRNCIFHAYVDGYSHQE
IAQKIGAPLGTVKAWIKRSLTALRECMG

Sequences:

>Translated_188_residues
MSSHESLFDYEATLQACARGEKQALQRLYQQESARLLGVAQRLVRDRALAEDIVHDAFLKIWSHAASFDASRGSARGWIF
SVTRHLALNTLRNTTREVRVEDDGSEDHHEQATLEGWQEIGDAFDWQVNPGRITSCLEQLEPVRRNCIFHAYVDGYSHQE
IAQKIGAPLGTVKAWIKRSLTALRECMG
>Mature_187_residues
SSHESLFDYEATLQACARGEKQALQRLYQQESARLLGVAQRLVRDRALAEDIVHDAFLKIWSHAASFDASRGSARGWIFS
VTRHLALNTLRNTTREVRVEDDGSEDHHEQATLEGWQEIGDAFDWQVNPGRITSCLEQLEPVRRNCIFHAYVDGYSHQEI
AQKIGAPLGTVKAWIKRSLTALRECMG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21307; Mature: 21176

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHESLFDYEATLQACARGEKQALQRLYQQESARLLGVAQRLVRDRALAEDIVHDAFLK
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWSHAASFDASRGSARGWIFSVTRHLALNTLRNTTREVRVEDDGSEDHHEQATLEGWQEI
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
GDAFDWQVNPGRITSCLEQLEPVRRNCIFHAYVDGYSHQEIAQKIGAPLGTVKAWIKRSL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
TALRECMG
HHHHHHCC
>Mature Secondary Structure 
SSHESLFDYEATLQACARGEKQALQRLYQQESARLLGVAQRLVRDRALAEDIVHDAFLK
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWSHAASFDASRGSARGWIFSVTRHLALNTLRNTTREVRVEDDGSEDHHEQATLEGWQEI
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
GDAFDWQVNPGRITSCLEQLEPVRRNCIFHAYVDGYSHQEIAQKIGAPLGTVKAWIKRSL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
TALRECMG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA