Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 66043626

GI number: 66043626

Start: 382734

End: 383402

Strand: Reverse

Name: yecS [H]

Synonym: Psyr_0357

Alternate gene names: 66043626

Gene position: 383402-382734 (Counterclockwise)

Preceding gene: 66043627

Following gene: 66043625

Centisome position: 6.29

GC content: 60.99

Gene sequence:

>669_bases
ATGATTGAAGAGAGCCTTCAGCTCGCGCTGGACTCCGCGCCCTTCCTGCTCAAGGGCGCGTACTACACGGTATTCCTCAG
TCTTGGCGGGATGTTTTTCGGTTTGCTGCTGGGCTTCGGCCTGGCATTGATGCGCCTTTCGCGCATCAAACCGGTGAACT
GGATAGCACGCATCTACGTGTCGTTCTTTCGCGGCACGCCCTTGCTGGTGCAGCTGTTCGTGATTTATTACGGCCTGCCG
GAGCTGGGTATCCAGCTTGAGCCGCTGAGCGCTGCACTGATCGGTTTTTCCCTGAATATGGCCGCCTACGCCTGTGAAAT
CCTGCGCGCGGCCATCAGTTCCGTGGAGCGCGGCCAGTGGGAGGCAGCGGCCAGTATCGGCATGACCCGCTGGCAGACCA
TGCGTCGGGCGATCCTCCCGCAGGCCGCACGCACCGCATTGCCGCCGCTGGGCAACAGCTTCATCTCGCTGGTCAAGGAC
ACGGCGCTGGCAGCCACCATCCAGGTGCCAGAGCTGTTCCGTCAGGCGCAGTTGATCACCGCACGCACCTTCGAAATTTT
CACCATGTACCTGGCCGCTGCACTGATCTACTGGATCCTTGCCACGGCGCTCTCGCACCTGCAAAACAAGCTGGAAGCCA
GGGTCAACCGGCACGATCTGGAGACCTGA

Upstream 100 bases:

>100_bases
CTGAATTGCTGGCGGCCATCGACAAGGCCATCGACAAACTGCGTGCCGACGGCACGCTGAAGAAGCTGTCGGAAAAGTAC
TTCAATGCTGATGTCACCCA

Downstream 100 bases:

>100_bases
CACATGATAGTGGTTGAAAAACTCACCAAGGCATTCAAGGGCAATCAGGTGCTCAAGGGCATCGATCTGCGTATCGAAGC
CGGGGAAGTCGTGGCCATCA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRIKPVNWIARIYVSFFRGTPLLVQLFVIYYGLP
ELGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKD
TALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLET

Sequences:

>Translated_222_residues
MIEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRIKPVNWIARIYVSFFRGTPLLVQLFVIYYGLP
ELGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKD
TALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLET
>Mature_222_residues
MIEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRIKPVNWIARIYVSFFRGTPLLVQLFVIYYGLP
ELGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQWEAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKD
TALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLET

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=75, Blast_Score=339, Evalue=8e-95,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=37.5609756097561, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1786873, Length=211, Percent_Identity=37.914691943128, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1787087, Length=228, Percent_Identity=30.7017543859649, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787086, Length=211, Percent_Identity=31.2796208530806, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788645, Length=228, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082239, Length=194, Percent_Identity=35.0515463917526, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=30, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786874, Length=211, Percent_Identity=30.8056872037915, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI48994930, Length=168, Percent_Identity=35.7142857142857, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24691; Mature: 24691

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRIKPVNWIARIYV
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
SFFRGTPLLVQLFVIYYGLPELGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQW
HHHCCCHHHHHHHHHHHCCHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLIT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIEESLQLALDSAPFLLKGAYYTVFLSLGGMFFGLLLGFGLALMRLSRIKPVNWIARIYV
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
SFFRGTPLLVQLFVIYYGLPELGIQLEPLSAALIGFSLNMAAYACEILRAAISSVERGQW
HHHCCCHHHHHHHHHHHCCHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EAAASIGMTRWQTMRRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLIT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTFEIFTMYLAAALIYWILATALSHLQNKLEARVNRHDLET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]