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The map label for this gene is yhgF [H]

Identifier: 66043527

GI number: 66043527

Start: 271515

End: 273833

Strand: Reverse

Name: yhgF [H]

Synonym: Psyr_0257

Alternate gene names: 66043527

Gene position: 273833-271515 (Counterclockwise)

Preceding gene: 66043530

Following gene: 66043526

Centisome position: 4.49

GC content: 61.92

Gene sequence:

>2319_bases
ATGGACAGCATCAACAGCCGCATCGCCGAAGAGCTCGGCGTACGCCCACAACAGGTCGCAGCGGCCGTAGCACTACTGGA
TGAAGGCTCGACCGTGCCCTTCATTTCCCGCTACCGCAAGGAAGTGACCGGCAGTCTTGATGACACGCAACTGCGCCATC
TGGAAGAGCGCCTGCGTTATCTGCGTGAACTGGACGAGCGGCGCGTCAGCATTCTTGCCAGCATCGAAGAGCAAGGCAAG
CTGACCCCGGAACTGGCGCGCGACATCAAGCTGGCCGACACCAAGACCCGCCTCGAAGACTTGTACCTGCCTTATAAGCA
GAAACGCCGCACCAAGGGCCAGATCGCCCTTGAAGCCGGGTTGGGCGAACTGGCCGACGGCCTGTTCAATGACCCGAGTC
TGGCTCCTGAAGCAGAAGCAGCCCGCTTCGTCGACGCGGATAAAGGCGTGGCTGATATAAAGGCTGCGCTGGAAGGCGCC
AAGTACATTCTGATGGAGCGCTTTGCCGAAGATGCCTCGCTGCTGGACAAGCTGCGCAGCTTCCTCAAGCAGGAAGCGGT
GATCAGCGCACGCGTGGTGCCGGGCAAGGAAGAGGAAGGCGCCAAGTTCCGCGACTACTTCGAACACGACGAGCCGCTCA
AGAGCATGCCGTCGCACCGTGCGCTGGCGATTTTCCGCGGTCGCAACGAAGGCTTTTTGAGCTCCGCACTGAAAGTCGGT
GAAGAATTGCCGGGCGCCATGCACCCGTGCGAGCTGATGATCGGTGAGCGCTTCGGCATCCAGAACCAGAACCGCCCGGC
AGACAAATGGCTGGCCGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTGTACAGCCACCTGGAAACCGATCTGCTGGGTG
AACTGCGTGACGGCGCGGAAACCGAAGCGATCAATGTGTTCGCCCACAACCTGCACGACCTGCTGCTCGCCGCCCCGGCC
GGCCAGCGCGCCACGCTGGGGCTCGATCCTGGCCTGCGTACCGGCTGCAAGGTCGCCGTAGTCGATGCCACCGGCAAACT
GCTCGACTACGCCACCGTCTATCCGCACGTTCCGAAGAACCAGTGGGACCAGACCATCGCCGTACTGGCCGCACTGTGCG
CCAAGCATTCGGTCGATCTGATTGCCATCGGCAACGGCACCGCCAGCCGCGAAACCGACAAGCTGGCTGCCGACCTGATC
AAAAAATACCCAGACCTGAAAATGACCAAGGTCATGGTCTCCGAAGCAGGCGCTTCGGTGTACTCGGCATCGGAACTGGC
CGCCAAGGAATTCCCGGACCTCGACGTGTCGATCCGTGGCGCGGTGTCCATCGCCCGTCGCTTGCAGGACCCGCTCGCCG
AACTGGTGAAGATTGATCCGAAATCCATCGGGGTCGGCCAGTATCAGCACGACGTTTCGCAGCTCAAGCTGGCGCGCGGC
CTGGATGCAGTGGTGGAAGACTGCGTGAACGCCGTGGGCGTGGACGTGAACACCGCCTCCGTGGCGCTGCTGGCACGCAT
TTCCGGCCTCAACACCACGCTGGCGCAGAACATCGTTGCGCATCGTGATGAAAACGGCGCGTTCAAGACCCGCGCGGCGC
TGAAGAAAGTCAGCCGCCTGGGCGAAAAGACCTTTGAACAGGCCGCCGGCTTCCTGCGCGTCATGACCGGTGACAACCCG
CTGGACGCGTCCGCCGTTCACCCGGAAGCCTACCCGCTGGTGCAGCGCATCGCGGCTGAAACCGACCGCGATATTCGCTC
GCTGATCGGCGACGCCAGCTTTCTCAAGCGTCTGGACCCGAAGAAATTCACCGACGAGACCTTTGGTCTGCCGACCGTGA
CCGACATCCTTCAGGAGCTCGAAAAGCCGGGCCGCGATCCGCGTCCAGAGTTCAAGACCGCAGAGTTTCAGGACGGGGTC
GAAGACCTCAAGGACCTGCAACTGGGGATGATCCTCGAGGGCGTGGTCACCAACGTCACCAACTTCGGTGCATTCGTCGA
TATCGGCGTGCATCAGGACGGTCTGGTGCACATCTCGGCGTTGTCCGAGAAGTTCATCAAGGACCCGCGCGAAGCAGTCA
AGGCCGGTGATGTGGTGAAAGTGAAGGTCATGGAAGTCGATATCCCGCGCAAACGCGTCGGTCTGTCGATGCGCATGAGC
GACACGCCCGGCGAGAAAATCGATGGCGCGCGCGGTGCCCGTCCGGGTTCTTCGCCTCGCCAGAACAACGCCCCGCGCAA
GGAAACCACTGCGCCAGCACCCGCCAACAATGCGATGGCATCGCTGTTCGCCAATGCCAAGCAACTGAAGAAGCGCTGA

Upstream 100 bases:

>100_bases
TGGCGGTTCGCCAGCCCTGAAAATAAATGCTGGCGCACGATACCCAGGCAAGGCAATTCGTACATAGCCCAGTTTTTTGC
TCACAACTCCAGGTGGTTTT

Downstream 100 bases:

>100_bases
TGGACATTCCTGAAGATCTGACCCACAGCGCCTACTTCAAGATGCTCGGCTGTGAGCTGCGGCGTCTGGACGAGGGCGTT
GCCGAAGTTGCGTTGCCGCT

Product: RNA binding S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MDSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRYLRELDERRVSILASIEEQGK
LTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGA
KYILMERFAEDASLLDKLRSFLKQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVG
EELPGAMHPCELMIGERFGIQNQNRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAETEAINVFAHNLHDLLLAAPA
GQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKNQWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLI
KKYPDLKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
LDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRLGEKTFEQAAGFLRVMTGDNP
LDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGV
EDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
DTPGEKIDGARGARPGSSPRQNNAPRKETTAPAPANNAMASLFANAKQLKKR

Sequences:

>Translated_772_residues
MDSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRYLRELDERRVSILASIEEQGK
LTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGA
KYILMERFAEDASLLDKLRSFLKQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVG
EELPGAMHPCELMIGERFGIQNQNRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAETEAINVFAHNLHDLLLAAPA
GQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKNQWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLI
KKYPDLKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
LDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRLGEKTFEQAAGFLRVMTGDNP
LDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGV
EDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
DTPGEKIDGARGARPGSSPRQNNAPRKETTAPAPANNAMASLFANAKQLKKR
>Mature_772_residues
MDSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRYLRELDERRVSILASIEEQGK
LTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGA
KYILMERFAEDASLLDKLRSFLKQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVG
EELPGAMHPCELMIGERFGIQNQNRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAETEAINVFAHNLHDLLLAAPA
GQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKNQWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLI
KKYPDLKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
LDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRLGEKTFEQAAGFLRVMTGDNP
LDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGV
EDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
DTPGEKIDGARGARPGSSPRQNNAPRKETTAPAPANNAMASLFANAKQLKKR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=788, Percent_Identity=33.6294416243655, Blast_Score=386, Evalue=1e-107,
Organism=Homo sapiens, GI27597090, Length=713, Percent_Identity=22.0196353436185, Blast_Score=97, Evalue=5e-20,
Organism=Escherichia coli, GI87082262, Length=775, Percent_Identity=65.2903225806452, Blast_Score=990, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=46.0526315789474, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=719, Percent_Identity=27.9554937413074, Blast_Score=228, Evalue=8e-60,
Organism=Caenorhabditis elegans, GI17552892, Length=297, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321552, Length=189, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI62484314, Length=773, Percent_Identity=32.0827943078913, Blast_Score=365, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24640080, Length=512, Percent_Identity=22.65625, Blast_Score=82, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84540; Mature: 84540

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRY
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELDERRVSILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG
HHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCEEEECC
LGELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGAKYILMERFAEDASLLDKLRS
CHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLKQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVG
HHHHHHHHHEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHH
EELPGAMHPCELMIGERFGIQNQNRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAE
HHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEAINVFAHNLHDLLLAAPAGQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCC
QWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLIKKYPDLKMTKVMVSEAGASV
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH
YSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GEKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDP
HHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHCCC
KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
HCCCEEEECCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCHHHHCCEEEEC
DTPGEKIDGARGARPGSSPRQNNAPRKETTAPAPANNAMASLFANAKQLKKR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRY
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELDERRVSILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG
HHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCEEEECC
LGELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGAKYILMERFAEDASLLDKLRS
CHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLKQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVG
HHHHHHHHHEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHH
EELPGAMHPCELMIGERFGIQNQNRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAE
HHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEAINVFAHNLHDLLLAAPAGQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCC
QWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLIKKYPDLKMTKVMVSEAGASV
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHH
YSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GEKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDP
HHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHCCC
KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
HCCCEEEECCCCCCCEEHHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCHHHHCCEEEEC
DTPGEKIDGARGARPGSSPRQNNAPRKETTAPAPANNAMASLFANAKQLKKR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]