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The map label for this gene is yoaB [C]

Identifier: 66043506

GI number: 66043506

Start: 250385

End: 250738

Strand: Direct

Name: yoaB [C]

Synonym: Psyr_0236

Alternate gene names: 66043506

Gene position: 250385-250738 (Clockwise)

Preceding gene: 66043505

Following gene: 66043507

Centisome position: 4.11

GC content: 61.3

Gene sequence:

>354_bases
ATGTCCATCCAGCGCCAGCTCACCAATGAGCGCATGAGTCAGGTCGTTGTCCACAATGGCACCGTCTATCTGTCGGGCCA
GGTCGGCAATGACATGACCGCCGGTGTCGAGCAGCAGACCCGAGAGGTTCTGAACAGCATCGAGCGCCTGCTCGACCTGG
CCGGCACCGACAAGACGCGTATCCTGTCGGTCACCATTTACCTGAAAGACATCGACGCCGACTTCGCCGGCATGAACAGC
GTCTGGGACAAATGGCTGCCCAAGGGTTTCGCGCCTGCACGCGCAACGGTCGAGGCCAAGCTGTGCGAGCCGGAAATCCT
CGTTGAACTGTCGGTGGTTGCCGCGCTGCCCTGA

Upstream 100 bases:

>100_bases
GGTCGTTTGCTGGCAGACCTCATCGCCCGCAAGACACCTCGTATCAGTGCTGAAGGCCTTGATATCTCTCGTTACGGCAA
TACCCAGGAGAATGCACAGC

Downstream 100 bases:

>100_bases
CTCCCTTTTGCCCGGCGCGTCCCTGCGTCGGGTTGATCTTCCCCTTCCATCCTTTCAGGCAAGTAAACGTCATCATGCGT
CCAGCCCGCGCCTTTATCGA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MSIQRQLTNERMSQVVVHNGTVYLSGQVGNDMTAGVEQQTREVLNSIERLLDLAGTDKTRILSVTIYLKDIDADFAGMNS
VWDKWLPKGFAPARATVEAKLCEPEILVELSVVAALP

Sequences:

>Translated_117_residues
MSIQRQLTNERMSQVVVHNGTVYLSGQVGNDMTAGVEQQTREVLNSIERLLDLAGTDKTRILSVTIYLKDIDADFAGMNS
VWDKWLPKGFAPARATVEAKLCEPEILVELSVVAALP
>Mature_116_residues
SIQRQLTNERMSQVVVHNGTVYLSGQVGNDMTAGVEQQTREVLNSIERLLDLAGTDKTRILSVTIYLKDIDADFAGMNSV
WDKWLPKGFAPARATVEAKLCEPEILVELSVVAALP

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=116, Percent_Identity=42.2413793103448, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12888; Mature: 12757

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQRQLTNERMSQVVVHNGTVYLSGQVGNDMTAGVEQQTREVLNSIERLLDLAGTDKTR
CCCHHHHHHHHHHHHEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
ILSVTIYLKDIDADFAGMNSVWDKWLPKGFAPARATVEAKLCEPEILVELSVVAALP
EEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHEEEHEEECCC
>Mature Secondary Structure 
SIQRQLTNERMSQVVVHNGTVYLSGQVGNDMTAGVEQQTREVLNSIERLLDLAGTDKTR
CCHHHHHHHHHHHHEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
ILSVTIYLKDIDADFAGMNSVWDKWLPKGFAPARATVEAKLCEPEILVELSVVAALP
EEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHEEEHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA