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The map label for this gene is yjgF [C]

Identifier: 66043478

GI number: 66043478

Start: 222599

End: 222979

Strand: Reverse

Name: yjgF [C]

Synonym: Psyr_0208

Alternate gene names: 66043478

Gene position: 222979-222599 (Counterclockwise)

Preceding gene: 66043479

Following gene: 66043477

Centisome position: 3.66

GC content: 56.69

Gene sequence:

>381_bases
ATGACCAAGACTGTCATCACCAGCGATAAAGCCCCTGCGGCCATTGGCCCTTACTCACAGGCCATCAAAGCTGGCAATAC
CGTCTACATGTCCGGACAGATCCCGTTGGACCCGAGCACCATGGAACTGGTCGAGGGCATCGAAGCCCAGATCACTCAGG
TCTTCGAAAACCTCAAGTCGGTTGCCGAAGCAGCGGGCGGATCGTTCAAGGACATCGTCAAACTGAACATCTTTCTGACC
GATCTGGGCCACTTCGCCAAGGTCAACGAGCTGATGAGCACCTACTTCACTCAGCCTTATCCGGCTCGTGCAGCCATCGG
CGTTGCGGCCCTGCCGCGTGGCGCCCAGGTTGAAATGGACGCGATTCTCGTCATCGAATAA

Upstream 100 bases:

>100_bases
CGTGCACCTGGCTCGTGTGATCAAGAAACTGCGCGCCCTGACCGGTGTCACACGCATCACCCGGATGCGCGCGTAGGCCA
TCCCACTATCAGGAGTTCTC

Downstream 100 bases:

>100_bases
ATCCCCGACGGAGCGTGCCTTGCGCTCCGTTCTCCCTGAAGGAAGGAATCCGTTATGCGCTCCGCGCTCGCCATCTCGCT
GCTCGCCGTCATTCTGGGCG

Product: YjgF-like protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MTKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENLKSVAEAAGGSFKDIVKLNIFLT
DLGHFAKVNELMSTYFTQPYPARAAIGVAALPRGAQVEMDAILVIE

Sequences:

>Translated_126_residues
MTKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENLKSVAEAAGGSFKDIVKLNIFLT
DLGHFAKVNELMSTYFTQPYPARAAIGVAALPRGAQVEMDAILVIE
>Mature_125_residues
TKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENLKSVAEAAGGSFKDIVKLNIFLTD
LGHFAKVNELMSTYFTQPYPARAAIGVAALPRGAQVEMDAILVIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=43.2, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=44.0944881889764, Blast_Score=109, Evalue=6e-26,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=40.8, Blast_Score=106, Evalue=5e-25,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=30.8943089430894, Blast_Score=64, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=49.1935483870968, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=49.1935483870968, Blast_Score=132, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=49.1935483870968, Blast_Score=132, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=40.650406504065, Blast_Score=103, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=46.078431372549, Blast_Score=98, Evalue=4e-22,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=38.2113821138211, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13419; Mature: 13287

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENLKS
CCCCEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAEAAGGSFKDIVKLNIFLTDLGHFAKVNELMSTYFTQPYPARAAIGVAALPRGAQVEMD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEE
AILVIE
EEEEEC
>Mature Secondary Structure 
TKTVITSDKAPAAIGPYSQAIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENLKS
CCCEECCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAEAAGGSFKDIVKLNIFLTDLGHFAKVNELMSTYFTQPYPARAAIGVAALPRGAQVEMD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEE
AILVIE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]