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The map label for this gene is yqhC [H]

Identifier: 66043463

GI number: 66043463

Start: 203917

End: 204834

Strand: Reverse

Name: yqhC [H]

Synonym: Psyr_0193

Alternate gene names: 66043463

Gene position: 204834-203917 (Counterclockwise)

Preceding gene: 66043465

Following gene: 66043460

Centisome position: 3.36

GC content: 61.33

Gene sequence:

>918_bases
ATGGATACACAGAATGCTGCGAGTGCTCCGGGCACCGATGTTTGCCGGAGTGAAATCATCCGGTTGCTGATGCAGCGCTT
TGCGGCACCCGGTGTTTATGAAACTGCTATTGCGCCGCTGCACGTTATCCGCTGCGATGCGCCGTCCGAGCTGATTCATG
CGCTGCATCGGCCAGCCCTTTGCGTGATCGTTCAAGGTCGCAAGGAGGTTGCGCTGGGCGATGAGCAGTATGTGTACGAT
CCGCTCAACTACCTGATCGTCGCGGTGACGGTGCCGGTCGCCGGGCGCGTGCTGGAAGCGAGTGGCGAGGCGCCCTATCT
GTGTATTCGTCTGGATTTCGAGCCTGCGCACATTGCCCAGTTCATTGCGGAAACGCCATTGAACGGCGTTCCGGACGAGC
CGCAGCGGGGCCTGTTTCTTGAGCAAATGGATCAGCCATTGCTGGAGACGGTGTTGCGGCTGGTGCGCCTGCTCGACACG
CCTCGCGACATCGCTATGCTCGCGCCCCTTGCACTTCGGGAGCTCTACTACCGGCTGCTGCGCGGCAACAATGGGCGGCG
ACTCTACGAAATCGCGGTCGGGGATTCGCAGACGCATCGCGTTACGCGGGCGGTCGACTGGCTGAACAGTCATTACACCG
AGCCGCTGCGCATCGACGAGCTGGCGCGCCTGGCCAACCTGGGCAATTCGACGCTGCACCACCGATTCAAGGCGCTGACC
GCCATGAGCCCGTTGCAGTACCAGAAAAAGCTGCGCCTGCAAGAGGCTCGACGGCTGATCATCAATGAAGGCCTGGATGC
CTCCAGCGCCTGCTATCGCGTCGGCTATGAAAGCCCTTCGCAATTCAGCAGGGAGTACAGCCGCCAGTTTGGCTGCCCAC
CCTCGACAGATCTCAGCCGAGTGCGGCAGATTGGCTGA

Upstream 100 bases:

>100_bases
TGGGTCTGCCTTACGCTGAATCGCCGCGCAATGGCCGCTATGATGGCGTTCGATGCAAAGGATGGGCGTACAGCAACACT
GACCTGGGACGGGGTTATTC

Downstream 100 bases:

>100_bases
CCTGCCCGTCCAACATCAGCGGCCGGGCGCGGCCAACCGCGCATATTGGTCCTGACTGATCCACCCGGTAAACGAGCGAT
CATCGGCATTGATGAGCTCG

Product: helix-turn-helix, AraC type:AraC-type transcriptional regulator, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDTQNAASAPGTDVCRSEIIRLLMQRFAAPGVYETAIAPLHVIRCDAPSELIHALHRPALCVIVQGRKEVALGDEQYVYD
PLNYLIVAVTVPVAGRVLEASGEAPYLCIRLDFEPAHIAQFIAETPLNGVPDEPQRGLFLEQMDQPLLETVLRLVRLLDT
PRDIAMLAPLALRELYYRLLRGNNGRRLYEIAVGDSQTHRVTRAVDWLNSHYTEPLRIDELARLANLGNSTLHHRFKALT
AMSPLQYQKKLRLQEARRLIINEGLDASSACYRVGYESPSQFSREYSRQFGCPPSTDLSRVRQIG

Sequences:

>Translated_305_residues
MDTQNAASAPGTDVCRSEIIRLLMQRFAAPGVYETAIAPLHVIRCDAPSELIHALHRPALCVIVQGRKEVALGDEQYVYD
PLNYLIVAVTVPVAGRVLEASGEAPYLCIRLDFEPAHIAQFIAETPLNGVPDEPQRGLFLEQMDQPLLETVLRLVRLLDT
PRDIAMLAPLALRELYYRLLRGNNGRRLYEIAVGDSQTHRVTRAVDWLNSHYTEPLRIDELARLANLGNSTLHHRFKALT
AMSPLQYQKKLRLQEARRLIINEGLDASSACYRVGYESPSQFSREYSRQFGCPPSTDLSRVRQIG
>Mature_305_residues
MDTQNAASAPGTDVCRSEIIRLLMQRFAAPGVYETAIAPLHVIRCDAPSELIHALHRPALCVIVQGRKEVALGDEQYVYD
PLNYLIVAVTVPVAGRVLEASGEAPYLCIRLDFEPAHIAQFIAETPLNGVPDEPQRGLFLEQMDQPLLETVLRLVRLLDT
PRDIAMLAPLALRELYYRLLRGNNGRRLYEIAVGDSQTHRVTRAVDWLNSHYTEPLRIDELARLANLGNSTLHHRFKALT
AMSPLQYQKKLRLQEARRLIINEGLDASSACYRVGYESPSQFSREYSRQFGCPPSTDLSRVRQIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=300, Percent_Identity=31, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34312; Mature: 34312

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTQNAASAPGTDVCRSEIIRLLMQRFAAPGVYETAIAPLHVIRCDAPSELIHALHRPAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEECCCHHHHHHHHCCCEE
CVIVQGRKEVALGDEQYVYDPLNYLIVAVTVPVAGRVLEASGEAPYLCIRLDFEPAHIAQ
EEEECCCCCEECCCCHHHHHHHHHEEHHHHHHHCCCCEECCCCCCEEEEEECCCHHHHHH
FIAETPLNGVPDEPQRGLFLEQMDQPLLETVLRLVRLLDTPRDIAMLAPLALRELYYRLL
HHHHCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RGNNGRRLYEIAVGDSQTHRVTRAVDWLNSHYTEPLRIDELARLANLGNSTLHHRFKALT
CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
AMSPLQYQKKLRLQEARRLIINEGLDASSACYRVGYESPSQFSREYSRQFGCPPSTDLSR
HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHH
VRQIG
HHHCC
>Mature Secondary Structure
MDTQNAASAPGTDVCRSEIIRLLMQRFAAPGVYETAIAPLHVIRCDAPSELIHALHRPAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEECCCHHHHHHHHCCCEE
CVIVQGRKEVALGDEQYVYDPLNYLIVAVTVPVAGRVLEASGEAPYLCIRLDFEPAHIAQ
EEEECCCCCEECCCCHHHHHHHHHEEHHHHHHHCCCCEECCCCCCEEEEEECCCHHHHHH
FIAETPLNGVPDEPQRGLFLEQMDQPLLETVLRLVRLLDTPRDIAMLAPLALRELYYRLL
HHHHCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RGNNGRRLYEIAVGDSQTHRVTRAVDWLNSHYTEPLRIDELARLANLGNSTLHHRFKALT
CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
AMSPLQYQKKLRLQEARRLIINEGLDASSACYRVGYESPSQFSREYSRQFGCPPSTDLSR
HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHH
VRQIG
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]