| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is gsiD [H]
Identifier: 66043425
GI number: 66043425
Start: 168620
End: 169498
Strand: Reverse
Name: gsiD [H]
Synonym: Psyr_0155
Alternate gene names: 66043425
Gene position: 169498-168620 (Counterclockwise)
Preceding gene: 66043426
Following gene: 66043424
Centisome position: 2.78
GC content: 64.51
Gene sequence:
>879_bases ATGACTCAATTCATTGCGAAATCGACGCCCGCAGCGCCGCAACCGGTGCTTCGCAAAAAAGCGTCCCTTCCGACCTCATG GCTTGGCCTGCTGGGCGCTACGGTGTGCTTCATCTGGCTGATGGTCGCCCTGTTCGGCCCCTGGCTGGCACCGCATCCGG TGGGCGAAGTGGTCTCCGACAACATGTTCGAAAACATGAGCGCAGCCTATCCCTTCGGTACGGACTACCTGGGCCGCGAC ATGCTCAGCCGCGTGCTGGTCGGCGCGCGCTTCACCGTCGGCCTGGCATTGATTTCTGCCGTGCTGGCCAGCGGCATCGG CACCCTGTGTGCGCTGCTGTCGGTGGTCGCGCCAAAATGGCTGGACGAAATCATCAGCCGCCTGATGGACGCGTTCATCT CGATCCCCAGCAAAATGCTGGCGCTGATCATGGTCTCGGCGTTCGGCTCGTCCGAGGTGCTGCTGATCTGCACGGCGGTG CTCAGCTACACCCCAGGCGCGTTTCGCATCGCGCGCAGTCTGGCGGTGAACATCGAGGCGCTGGAGTACGTGCAGGTAGC GCGCACACGCGGCGAGGGTCGTATCTACATTGCCTGCCGGGAAATCCTGCCGAACATGCTCAACCCGGTCATGACCGACC TGGGCCTGCGTTTCGGCTTCATCGTCCTGCTGCTCAGCGGCATGAGCTTTCTGGGGCTCGGTGTACAACCGCCTGACGCC GACCTTGGCTCGCTGGTCCGCGAGAACATCGGCGGGCTCAGCCAGGGCGCGCCGGCCATCGTGATCCCGGCCCTGGCCAT CGGCACCCTGACCATCGGCGTGAACCTGCTCATCGACCGGCTGGCCTCGCGGCGCGGTCGTCGTTCGGGAGGGCATTGA
Upstream 100 bases:
>100_bases TGGTGCAGGGCTGCACGATGCTGTTCTGCTCCGCTTACCTTGGGTTGGTGCTGATGGCCGACCTGTGTGCAATTCTTTCC AATCCGAGGCTGAGAACCCA
Downstream 100 bases:
>100_bases GATGAGCCAGTTGATTCGTGTGCAAGACCTGCGCGTGGTTGCCGATGGCGACCACGGCGAGCTGGAGATCGTCAAAGGCG TCAGCTTTGCGCTGGAAAAA
Product: binding-protein dependent transport system inner membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MTQFIAKSTPAAPQPVLRKKASLPTSWLGLLGATVCFIWLMVALFGPWLAPHPVGEVVSDNMFENMSAAYPFGTDYLGRD MLSRVLVGARFTVGLALISAVLASGIGTLCALLSVVAPKWLDEIISRLMDAFISIPSKMLALIMVSAFGSSEVLLICTAV LSYTPGAFRIARSLAVNIEALEYVQVARTRGEGRIYIACREILPNMLNPVMTDLGLRFGFIVLLLSGMSFLGLGVQPPDA DLGSLVRENIGGLSQGAPAIVIPALAIGTLTIGVNLLIDRLASRRGRRSGGH
Sequences:
>Translated_292_residues MTQFIAKSTPAAPQPVLRKKASLPTSWLGLLGATVCFIWLMVALFGPWLAPHPVGEVVSDNMFENMSAAYPFGTDYLGRD MLSRVLVGARFTVGLALISAVLASGIGTLCALLSVVAPKWLDEIISRLMDAFISIPSKMLALIMVSAFGSSEVLLICTAV LSYTPGAFRIARSLAVNIEALEYVQVARTRGEGRIYIACREILPNMLNPVMTDLGLRFGFIVLLLSGMSFLGLGVQPPDA DLGSLVRENIGGLSQGAPAIVIPALAIGTLTIGVNLLIDRLASRRGRRSGGH >Mature_291_residues TQFIAKSTPAAPQPVLRKKASLPTSWLGLLGATVCFIWLMVALFGPWLAPHPVGEVVSDNMFENMSAAYPFGTDYLGRDM LSRVLVGARFTVGLALISAVLASGIGTLCALLSVVAPKWLDEIISRLMDAFISIPSKMLALIMVSAFGSSEVLLICTAVL SYTPGAFRIARSLAVNIEALEYVQVARTRGEGRIYIACREILPNMLNPVMTDLGLRFGFIVLLLSGMSFLGLGVQPPDAD LGSLVRENIGGLSQGAPAIVIPALAIGTLTIGVNLLIDRLASRRGRRSGGH
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1173
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=255, Percent_Identity=29.8039215686275, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787760, Length=260, Percent_Identity=32.3076923076923, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1789964, Length=252, Percent_Identity=30.5555555555556, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787549, Length=282, Percent_Identity=25.886524822695, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1789889, Length=215, Percent_Identity=26.5116279069767, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787498, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31068; Mature: 30937
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQFIAKSTPAAPQPVLRKKASLPTSWLGLLGATVCFIWLMVALFGPWLAPHPVGEVVSD CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH NMFENMSAAYPFGTDYLGRDMLSRVLVGARFTVGLALISAVLASGIGTLCALLSVVAPKW HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDEIISRLMDAFISIPSKMLALIMVSAFGSSEVLLICTAVLSYTPGAFRIARSLAVNIEA HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LEYVQVARTRGEGRIYIACREILPNMLNPVMTDLGLRFGFIVLLLSGMSFLGLGVQPPDA HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DLGSLVRENIGGLSQGAPAIVIPALAIGTLTIGVNLLIDRLASRRGRRSGGH HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TQFIAKSTPAAPQPVLRKKASLPTSWLGLLGATVCFIWLMVALFGPWLAPHPVGEVVSD CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH NMFENMSAAYPFGTDYLGRDMLSRVLVGARFTVGLALISAVLASGIGTLCALLSVVAPKW HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDEIISRLMDAFISIPSKMLALIMVSAFGSSEVLLICTAVLSYTPGAFRIARSLAVNIEA HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LEYVQVARTRGEGRIYIACREILPNMLNPVMTDLGLRFGFIVLLLSGMSFLGLGVQPPDA HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DLGSLVRENIGGLSQGAPAIVIPALAIGTLTIGVNLLIDRLASRRGRRSGGH HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]