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The map label for this gene is ybaO [H]

Identifier: 66043403

GI number: 66043403

Start: 140694

End: 141164

Strand: Reverse

Name: ybaO [H]

Synonym: Psyr_0133

Alternate gene names: 66043403

Gene position: 141164-140694 (Counterclockwise)

Preceding gene: 66043413

Following gene: 66043402

Centisome position: 2.32

GC content: 60.72

Gene sequence:

>471_bases
ATGGACAAATTCGACCGGGCAATCCTTGACATCCTGCAAACCGACTGCACCCGCTCAGTCGCAGACATCGCCGAGCGTAT
CGGCCTGGGCAGTACCGCGTGCTGGCGGCGTATCCAGAAGCTGGAAGAAGCCGGCATCATCGACCGCCGGGTCGCGCTGC
TCAATCCGCAAAGGCTGAACGTGTCAGTCAGCGTCTTCGCCGCCATCCGCACCAACCAGCACAACGCCGCCTGGCTCGAA
CAGTTTCACGCTGCTGTAGGCGAGCTGCCTGAAGTGGTCGAGTGCTACCGCATGGCAGGTGACACCGACTACATGCTGCG
CATCGTCGTGGCCGCCATTGCAGGGTACGACGCGGTGTACAAGCAACTGATCAGCATCCCCGGCATCAGCGACGTGAGCT
CCAGCTTCGCCATGGAACAGATCAAATTCACCACCGGTCTGCCCTTGCAATACGCATCGTTTGGCGGCTGA

Upstream 100 bases:

>100_bases
AAAGGCATGCCAACGCGGAGCATTGGCACGATAGTTACCGCAGTCAGACCTCCATCGTTCCGCACGATCAATGTAGAGCG
ACTAACGCAGGAAACCGCTA

Downstream 100 bases:

>100_bases
GCGCAGCCACGCTCATCGATTGAATCGAACCCTCGGCCCGATGCCACGTCCATATTCTTTGGCAAACGAAAAAGGTGGCT
GACATGACAACCGATCACAT

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MDKFDRAILDILQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLNVSVSVFAAIRTNQHNAAWLE
QFHAAVGELPEVVECYRMAGDTDYMLRIVVAAIAGYDAVYKQLISIPGISDVSSSFAMEQIKFTTGLPLQYASFGG

Sequences:

>Translated_156_residues
MDKFDRAILDILQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLNVSVSVFAAIRTNQHNAAWLE
QFHAAVGELPEVVECYRMAGDTDYMLRIVVAAIAGYDAVYKQLISIPGISDVSSSFAMEQIKFTTGLPLQYASFGG
>Mature_156_residues
MDKFDRAILDILQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLNVSVSVFAAIRTNQHNAAWLE
QFHAAVGELPEVVECYRMAGDTDYMLRIVVAAIAGYDAVYKQLISIPGISDVSSSFAMEQIKFTTGLPLQYASFGG

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=47.0198675496689, Blast_Score=162, Evalue=7e-42,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=36.4864864864865, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17227; Mature: 17227

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFDRAILDILQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
VSVSVFAAIRTNQHNAAWLEQFHAAVGELPEVVECYRMAGDTDYMLRIVVAAIAGYDAVY
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KQLISIPGISDVSSSFAMEQIKFTTGLPLQYASFGG
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDKFDRAILDILQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
VSVSVFAAIRTNQHNAAWLEQFHAAVGELPEVVECYRMAGDTDYMLRIVVAAIAGYDAVY
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KQLISIPGISDVSSSFAMEQIKFTTGLPLQYASFGG
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]