Click here to switch to the map view.

The map label for this gene is algQ [H]

Identifier: 161486741

GI number: 161486741

Start: 56893

End: 57366

Strand: Reverse

Name: algQ [H]

Synonym: Psyr_0056

Alternate gene names: 161486741

Gene position: 57366-56893 (Counterclockwise)

Preceding gene: 66043328

Following gene: 66043325

Centisome position: 0.94

GC content: 57.17

Gene sequence:

>474_bases
ATGCTGGAAAGTTGTCAGAATGCTCAGGAACGCTGGGGCGGGGTGAACAAGCTGATTGATCGCTGGCTTCAAAGCCGTCT
CAAACTGGTCGAAGCCTACGATGCACTGGGCGACACGCCCGCAGCGCTGGCAGCCGACCGCGAAGGCTTGCAGAACTTTT
GCGGCATTCTTGTGGATTACGTCTCCGCCGGGCACTTCGAGGTTTACGAACAACTGGGTGATGAAGCGCGAGCGTTCAAC
GACAAACGTGGGCTCGAACTGGCAGACACGATCTATCCGCGTCTGGACTTCATTACCAAGTTTGCGCTGACGTTCAATGA
TCGCTGCGACAAGGGCGACTGCTCGGATGCGACGGCGGTGGCCCGGGAGTTCAACCAGCTGGGGCAATTGCTGCACGAGC
GTTTCGAGCTGGAAGACTGCTTGATTGAAGTCCTGCATAACTCGCACAAGGAAGAGATCGCCGCTCAGGTGTGA

Upstream 100 bases:

>100_bases
ACTGGAAATATGCTGTCCTGACGCATTTATCAGGTCAGGTCCCGGCCAACTACCAGGACCGGCCCAGGACTGCATGCCCC
TGAAGGGAAGAGAGAAGACC

Downstream 100 bases:

>100_bases
CCTGGTTGATGCAAGTGCTACACGCCAAGGGTGCTTATTGCACCCTTTCGCATTTCTGAACGCCGGTCTCCGTCCGCTTA
CTGTGAAACCGCAACCAGCT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: Alginate regulatory protein AlgR2 [H]

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MLESCQNAQERWGGVNKLIDRWLQSRLKLVEAYDALGDTPAALAADREGLQNFCGILVDYVSAGHFEVYEQLGDEARAFN
DKRGLELADTIYPRLDFITKFALTFNDRCDKGDCSDATAVAREFNQLGQLLHERFELEDCLIEVLHNSHKEEIAAQV

Sequences:

>Translated_157_residues
MLESCQNAQERWGGVNKLIDRWLQSRLKLVEAYDALGDTPAALAADREGLQNFCGILVDYVSAGHFEVYEQLGDEARAFN
DKRGLELADTIYPRLDFITKFALTFNDRCDKGDCSDATAVAREFNQLGQLLHERFELEDCLIEVLHNSHKEEIAAQV
>Mature_157_residues
MLESCQNAQERWGGVNKLIDRWLQSRLKLVEAYDALGDTPAALAADREGLQNFCGILVDYVSAGHFEVYEQLGDEARAFN
DKRGLELADTIYPRLDFITKFALTFNDRCDKGDCSDATAVAREFNQLGQLLHERFELEDCLIEVLHNSHKEEIAAQV

Specific function: The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e., under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, h

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=154, Percent_Identity=36.3636363636364, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 17768; Mature: 17768

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESCQNAQERWGGVNKLIDRWLQSRLKLVEAYDALGDTPAALAADREGLQNFCGILVDY
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VSAGHFEVYEQLGDEARAFNDKRGLELADTIYPRLDFITKFALTFNDRCDKGDCSDATAV
HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AREFNQLGQLLHERFELEDCLIEVLHNSHKEEIAAQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLESCQNAQERWGGVNKLIDRWLQSRLKLVEAYDALGDTPAALAADREGLQNFCGILVDY
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VSAGHFEVYEQLGDEARAFNDKRGLELADTIYPRLDFITKFALTFNDRCDKGDCSDATAV
HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AREFNQLGQLLHERFELEDCLIEVLHNSHKEEIAAQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2514124; 2110144; 10984043 [H]