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The map label for this gene is yocS [H]

Identifier: 62391170

GI number: 62391170

Start: 2437711

End: 2438685

Strand: Reverse

Name: yocS [H]

Synonym: cg2557

Alternate gene names: 62391170

Gene position: 2438685-2437711 (Counterclockwise)

Preceding gene: 62391172

Following gene: 62391168

Centisome position: 74.29

GC content: 52.82

Gene sequence:

>975_bases
GTGTCCAAAACAGAAGAAGGCCGTTCAGCGGCCATAATTATTTACGCGTTTCCAACTTTCATTCTGCTGGGCGCGATCAT
TGCGTTTATCTTCCCGGAACCATTCATTCCGCTGACAAACTACATTAATATCTTCCTCACGATCATCATGTTCACCATGG
GTTTGACCTTGACGGTGCCCGATTTTCAGATGGTGCTTAAACGTCCACTGCCTATCTTGATCGGTGTAGTAGCGCAGTTT
GTCATCATGCCATTCCTGGCGATCGTGGTTGCGAAAATGTTCAACCTCAACCCAGCACTCGCCGTTGGCCTTCTCATGCT
GGGATCCGTTCCGGGTGGCACCTCCTCCAATGTGATTGCGTTTCTCGCCCGAGGAGATGTCGCGCTATCGGTCACCATGA
CCTCTGTGTCCACCATTGTTTCCCCAATCATGACGCCTTTCCTCATGCTCATGCTGGCAGGTACTGAAACCGCCGTCGAT
GGTGGAGGCATGGCGTGGACTTTGGTACAAACAGTGCTGCTGCCTGTGATCATCGGCCTAGTTCTGCGTGTCTTCTTGAA
CAAGTGGATCGACAAGATTTTGCCGATCCTTCCTTATCTCTCCATCCTCGGTATCGGTGGCGTGGTGTTCGGCGCAGTCG
CAGCCAACGCGGAACGACTCGTGTCTGTCGGACTCATCGTGTTCGTTGCAGTTATCGTGCACAACGTACTTGGATACGTT
GTGGGATACCTCACCGGCCGTGTATTCAAATTCCCAGAAGCAGCAAACCGCACCATGGCGATTGAAATCGGAACCCAATC
CGCAGGCCTCGCATCGGGAATGGCAGGACGATTCTTCACCCCAGAAGCAGCCCTTCCAGGTGCTGTCGCTGCCTTGGTCC
ACAACATCACCGGCGCAGTTTATGTTGGGCTGGTACGAAACAGGCCTTTGACTAAGGCATCAAGGAAGAAGGAATCCGTC
GCGGTTTCCAGCTAA

Upstream 100 bases:

>100_bases
CACTACTGCGTTAAGGTATGAAAGTTCGCACACCAGCGATTTAATTCTGTGCCCACCACTAGCACGACCATTTCAGTTTT
AACTTTCTTGGAGTTTTCTA

Downstream 100 bases:

>100_bases
CTTATTTGCTGCCCGTTAGAGGCGCTGAGTTTTTGACACGGGCGTGCCCTTGGATGAGCTCATGTTGGAGCTTCTAACGG
CTATACAGAGAGTCGACTTT

Product: Na+-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVPDFQMVLKRPLPILIGVVAQF
VIMPFLAIVVAKMFNLNPALAVGLLMLGSVPGGTSSNVIAFLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVD
GGGMAWTLVQTVLLPVIIGLVLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLVSVGLIVFVAVIVHNVLGYV
VGYLTGRVFKFPEAANRTMAIEIGTQSAGLASGMAGRFFTPEAALPGAVAALVHNITGAVYVGLVRNRPLTKASRKKESV
AVSS

Sequences:

>Translated_324_residues
MSKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVPDFQMVLKRPLPILIGVVAQF
VIMPFLAIVVAKMFNLNPALAVGLLMLGSVPGGTSSNVIAFLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVD
GGGMAWTLVQTVLLPVIIGLVLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLVSVGLIVFVAVIVHNVLGYV
VGYLTGRVFKFPEAANRTMAIEIGTQSAGLASGMAGRFFTPEAALPGAVAALVHNITGAVYVGLVRNRPLTKASRKKESV
AVSS
>Mature_323_residues
SKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVPDFQMVLKRPLPILIGVVAQFV
IMPFLAIVVAKMFNLNPALAVGLLMLGSVPGGTSSNVIAFLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVDG
GGMAWTLVQTVLLPVIIGLVLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLVSVGLIVFVAVIVHNVLGYVV
GYLTGRVFKFPEAANRTMAIEIGTQSAGLASGMAGRFFTPEAALPGAVAALVHNITGAVYVGLVRNRPLTKASRKKESVA
VSS

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=257, Percent_Identity=33.0739299610895, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI4506971, Length=254, Percent_Identity=27.9527559055118, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI37537552, Length=256, Percent_Identity=25.390625, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI215422368, Length=215, Percent_Identity=31.1627906976744, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=29.8245614035088, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=29.8245614035088, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI24308414, Length=277, Percent_Identity=29.6028880866426, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI58219066, Length=231, Percent_Identity=30.7359307359307, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115533076, Length=103, Percent_Identity=39.8058252427184, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 34265; Mature: 34134

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVP
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECC
DFQMVLKRPLPILIGVVAQFVIMPFLAIVVAKMFNLNPALAVGLLMLGSVPGGTSSNVIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEE
FLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVDGGGMAWTLVQTVLLPVIIGL
EEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
VLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLVSVGLIVFVAVIVHNVLGYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGYLTGRVFKFPEAANRTMAIEIGTQSAGLASGMAGRFFTPEAALPGAVAALVHNITGAV
HHHHHHHHEECCHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
YVGLVRNRPLTKASRKKESVAVSS
HHHHHCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVP
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECC
DFQMVLKRPLPILIGVVAQFVIMPFLAIVVAKMFNLNPALAVGLLMLGSVPGGTSSNVIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEE
FLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVDGGGMAWTLVQTVLLPVIIGL
EEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
VLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLVSVGLIVFVAVIVHNVLGYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGYLTGRVFKFPEAANRTMAIEIGTQSAGLASGMAGRFFTPEAALPGAVAALVHNITGAV
HHHHHHHHEECCHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
YVGLVRNRPLTKASRKKESVAVSS
HHHHHCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]