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The map label for this gene is yifB [C]

Identifier: 62390869

GI number: 62390869

Start: 2114113

End: 2115636

Strand: Reverse

Name: yifB [C]

Synonym: cg2227

Alternate gene names: 62390869

Gene position: 2115636-2114113 (Counterclockwise)

Preceding gene: 62390870

Following gene: 62390868

Centisome position: 64.45

GC content: 53.67

Gene sequence:

>1524_bases
ATGGCGCTCGGTAGAACTATATCCACTGCGCAATTAGGTGTGCAGGCAAAAATCGTTCGTGTGGAGGCTAATGTTGGCCC
AGGATTGCCTGGTACCTACATTGTTGGATTAGCAGATACTGCCATTTCAGAATCTCGGGATCGTATTAAAACTGCGGTGC
AAAACAGTGGCTTGATGTGGCCAAAGACCAAAGTGATCATTAACCTCTCGCCGGCTTCCATGCGTAAACAAGGTTCGCAG
TGTGATCTCGCGATGACCGTTGCAGTTCTCGTTGCCCATGGCTCTAACCCCAAAGCGAAGTTTCATGCGCAGAACACGTT
ATTTCTGGGTGAGGTGGCGCTTGATGGAACCTTGCTCCCTGTTACTGGAGTTCTTCCAGCGCTGTTGGCCGCGAAGGAGG
AAGGTATTGGCAAGATTGTGATCCCGGAGGGAAATGCCCAAGAAGCAGGACTGGTTGAGGATCCTTCAGTCTTTTTGGCA
CATTCCATCGACCAGGTCTTGCGATGGCTTGATGGGGAAGAGGCGTTGCCTCAGCCTGGACTATTCAATGATGAAAATAG
CCTCAAACTGCCTGATATGCGTGATGTGGTGGGACAACCAGAAGCTAGGTTTGCTGCAGAAGTAGCTGCTGCCGGTGGTC
ACCACATGCTGATGATTGGCCCTCCCGGTTCTGGAAAATCCATGATCGCCGAGCGGATTCCCAGCTTGCTTCCCGAACTG
TCGCCCCAACAAATGATCGAGGCGACGGCAGTGCATTCCGTTGTGGGGCGAACCTTTTCAGGGCCGGTGTCGAGGGCTCC
GTTTATTTCCCCACACCACAATGTCAGCAAGGCTGCTCTGCTCGGAGGTGGCTCGGGATCTCCTCTTCCGGGTGCTATCA
GCCTGGCGCATCATGGTGTGTTGTTCCTGGATGAGGTTAGTGAGATTCCAGCGTCAATCCTTGATTCTTTGAGGACTCCA
TTGGAATACGGCTCGATCCGCATCATCAGATCCCGCCATGATGTCACCTTCCCCGCACAGTTCCAGCTCATCCTCGCGGC
CAATCCGTGTAGATGCGGTGCAGAACAGCCTCAAGAATGTGTCTGTTCTGGCTCAGCTCGCGCGACGTACCTTAATAATC
TTTCGGGTCCGTTGAGGGATCGCTTGGACATGGTTGTTGCCACCCACTCTAAAGGTGCAGTGCTGCGTAGTGATGACGTT
GAGGCATCTGCTCCCATTGCTGATCGGGTGGCACAAGCTCGTGAGAGGGCAGCTTTCCGATGGCGCCGTTCTGGACTGGG
AAATCTTGTTAATGCACACGTAGATCCACACTTCTTGCGGAGGAATTTTGCCGCAACAGAAGACGCCATGGTGTACCTCG
GCGCGTTCCTGGCGGAAGGAACAATCTCCCAACGTGGCTGCGATCGGGCCATAAAACTGGGTTGGACCTTGTGCGATTTG
GATGGGGAACAGCAGCCCAATCTTGACCATATTGCGCGAGCCATGGAGCTTCGGGGCACTACATACAGTGAGGTAGCAGC
ATGA

Upstream 100 bases:

>100_bases
GAGGGTAAACCTTATACTCCGATTCGTTTTGATGTGGTGGCAATCGTTTTGGATCCGCACACGGGGCGCCCAGAGATCAC
TGTTTATGAGGATGTGGAAC

Downstream 100 bases:

>100_bases
TTGACTCCCGCTTGCTGGCATGGGCGTATCTCTCAAAAGTGGTGGAGGGTCCCAATGCACACCTGCAAAAGCTCCTGAAA
GAAGGTCATGATGTAGAGCG

Product: ATPase with chaperone activity

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MALGRTISTAQLGVQAKIVRVEANVGPGLPGTYIVGLADTAISESRDRIKTAVQNSGLMWPKTKVIINLSPASMRKQGSQ
CDLAMTVAVLVAHGSNPKAKFHAQNTLFLGEVALDGTLLPVTGVLPALLAAKEEGIGKIVIPEGNAQEAGLVEDPSVFLA
HSIDQVLRWLDGEEALPQPGLFNDENSLKLPDMRDVVGQPEARFAAEVAAAGGHHMLMIGPPGSGKSMIAERIPSLLPEL
SPQQMIEATAVHSVVGRTFSGPVSRAPFISPHHNVSKAALLGGGSGSPLPGAISLAHHGVLFLDEVSEIPASILDSLRTP
LEYGSIRIIRSRHDVTFPAQFQLILAANPCRCGAEQPQECVCSGSARATYLNNLSGPLRDRLDMVVATHSKGAVLRSDDV
EASAPIADRVAQARERAAFRWRRSGLGNLVNAHVDPHFLRRNFAATEDAMVYLGAFLAEGTISQRGCDRAIKLGWTLCDL
DGEQQPNLDHIARAMELRGTTYSEVAA

Sequences:

>Translated_507_residues
MALGRTISTAQLGVQAKIVRVEANVGPGLPGTYIVGLADTAISESRDRIKTAVQNSGLMWPKTKVIINLSPASMRKQGSQ
CDLAMTVAVLVAHGSNPKAKFHAQNTLFLGEVALDGTLLPVTGVLPALLAAKEEGIGKIVIPEGNAQEAGLVEDPSVFLA
HSIDQVLRWLDGEEALPQPGLFNDENSLKLPDMRDVVGQPEARFAAEVAAAGGHHMLMIGPPGSGKSMIAERIPSLLPEL
SPQQMIEATAVHSVVGRTFSGPVSRAPFISPHHNVSKAALLGGGSGSPLPGAISLAHHGVLFLDEVSEIPASILDSLRTP
LEYGSIRIIRSRHDVTFPAQFQLILAANPCRCGAEQPQECVCSGSARATYLNNLSGPLRDRLDMVVATHSKGAVLRSDDV
EASAPIADRVAQARERAAFRWRRSGLGNLVNAHVDPHFLRRNFAATEDAMVYLGAFLAEGTISQRGCDRAIKLGWTLCDL
DGEQQPNLDHIARAMELRGTTYSEVAA
>Mature_506_residues
ALGRTISTAQLGVQAKIVRVEANVGPGLPGTYIVGLADTAISESRDRIKTAVQNSGLMWPKTKVIINLSPASMRKQGSQC
DLAMTVAVLVAHGSNPKAKFHAQNTLFLGEVALDGTLLPVTGVLPALLAAKEEGIGKIVIPEGNAQEAGLVEDPSVFLAH
SIDQVLRWLDGEEALPQPGLFNDENSLKLPDMRDVVGQPEARFAAEVAAAGGHHMLMIGPPGSGKSMIAERIPSLLPELS
PQQMIEATAVHSVVGRTFSGPVSRAPFISPHHNVSKAALLGGGSGSPLPGAISLAHHGVLFLDEVSEIPASILDSLRTPL
EYGSIRIIRSRHDVTFPAQFQLILAANPCRCGAEQPQECVCSGSARATYLNNLSGPLRDRLDMVVATHSKGAVLRSDDVE
ASAPIADRVAQARERAAFRWRRSGLGNLVNAHVDPHFLRRNFAATEDAMVYLGAFLAEGTISQRGCDRAIKLGWTLCDLD
GEQQPNLDHIARAMELRGTTYSEVAA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=503, Percent_Identity=37.1769383697813, Blast_Score=300, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 53911; Mature: 53780

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGRTISTAQLGVQAKIVRVEANVGPGLPGTYIVGLADTAISESRDRIKTAVQNSGLMW
CCCCCCCCHHHCCCEEEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCC
PKTKVIINLSPASMRKQGSQCDLAMTVAVLVAHGSNPKAKFHAQNTLFLGEVALDGTLLP
CCEEEEEEECCHHHHHCCCCCHHHHEEHHHHCCCCCCCEEEEECCEEEEEEEEECCEEEC
VTGVLPALLAAKEEGIGKIVIPEGNAQEAGLVEDPSVFLAHSIDQVLRWLDGEEALPQPG
HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
LFNDENSLKLPDMRDVVGQPEARFAAEVAAAGGHHMLMIGPPGSGKSMIAERIPSLLPEL
CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
SPQQMIEATAVHSVVGRTFSGPVSRAPFISPHHNVSKAALLGGGSGSPLPGAISLAHHGV
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCE
LFLDEVSEIPASILDSLRTPLEYGSIRIIRSRHDVTFPAQFQLILAANPCRCGAEQPQEC
EEEHHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCHHH
VCSGSARATYLNNLSGPLRDRLDMVVATHSKGAVLRSDDVEASAPIADRVAQARERAAFR
HHCCCCCCHHHHCCCCHHHHHHHEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
WRRSGLGNLVNAHVDPHFLRRNFAATEDAMVYLGAFLAEGTISQRGCDRAIKLGWTLCDL
HHHHCCCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCCCHHHHCCEEEECC
DGEQQPNLDHIARAMELRGTTYSEVAA
CCCCCCCHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure 
ALGRTISTAQLGVQAKIVRVEANVGPGLPGTYIVGLADTAISESRDRIKTAVQNSGLMW
CCCCCCCHHHCCCEEEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCC
PKTKVIINLSPASMRKQGSQCDLAMTVAVLVAHGSNPKAKFHAQNTLFLGEVALDGTLLP
CCEEEEEEECCHHHHHCCCCCHHHHEEHHHHCCCCCCCEEEEECCEEEEEEEEECCEEEC
VTGVLPALLAAKEEGIGKIVIPEGNAQEAGLVEDPSVFLAHSIDQVLRWLDGEEALPQPG
HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
LFNDENSLKLPDMRDVVGQPEARFAAEVAAAGGHHMLMIGPPGSGKSMIAERIPSLLPEL
CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
SPQQMIEATAVHSVVGRTFSGPVSRAPFISPHHNVSKAALLGGGSGSPLPGAISLAHHGV
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCE
LFLDEVSEIPASILDSLRTPLEYGSIRIIRSRHDVTFPAQFQLILAANPCRCGAEQPQEC
EEEHHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCHHH
VCSGSARATYLNNLSGPLRDRLDMVVATHSKGAVLRSDDVEASAPIADRVAQARERAAFR
HHCCCCCCHHHHCCCCHHHHHHHEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
WRRSGLGNLVNAHVDPHFLRRNFAATEDAMVYLGAFLAEGTISQRGCDRAIKLGWTLCDL
HHHHCCCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCCCHHHHCCEEEECC
DGEQQPNLDHIARAMELRGTTYSEVAA
CCCCCCCHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]