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The map label for this gene is rnd [H]

Identifier: 62390740

GI number: 62390740

Start: 1972174

End: 1973385

Strand: Direct

Name: rnd [H]

Synonym: cg2081

Alternate gene names: 62390740

Gene position: 1972174-1973385 (Clockwise)

Preceding gene: 62390739

Following gene: 62390745

Centisome position: 60.08

GC content: 55.53

Gene sequence:

>1212_bases
ATGGTTTCCGATCTCCTTCAACCCCGCGACGGCATTCCGCCTTTGCTATCTACCCCTGGTGAGTTCACTGCTGCGGCAGA
TCTCTTGGCTAGCGGAACTGGGCCCTTCGCCATTGATACGGAACGCGCGTCCGGTTTTAGATACGATGACCGCGCATTTT
TGATTCAGATCCGGCGCCGTGGCAGCGGAACTCTCCTATTCGACCCGGAGCAGTTCCGTCCTGAATTAACTCAGGCGTTA
AAGCCGGTGCTCAATGGTCAAGAGTGGATCATTCACGCAGCAAGCACCGATTTGCCGAGCCTTGCGTGGCTTGATCTTCA
CCCCGGATTACTCTTTGATACAGAACTTGCTGGCCGCTTAGCCGGATTTGATCACGTTAATCTCGCTGCCATGGTGGAAC
AGATTTTTGATCTCCACTTGCTCAAAGGCCACGGTTCGGAAGATTGGTCCAAGCGTCCTCTGCCGGAATCTTGGCTCAAC
TACGCAGCACTCGATGTGGAGATGCTGCTGGAGCTTGCCGATGTCATGGCTGAAATCCTGGATCAGCAGGGAAAACTCCC
CTGGGCTGAACAGGAATTTGTCCATATTGTGGATCAATTCGCCACGATGACCGAACCTTCCGAAACGTCCTGGCAGGACC
TTAAAGGGCTGTCCACTCTCAAACGACCAGACCAATTAGTTGTGGCCCGTGAAATGTGGTTGGAACGCGACTCTTTCGCA
GCCTCCCGCGACCTGGCGCCCGGTAAAGTGCTGTCCAACAAAGTCATCGTGGAAGTCGCCCGTGTTCTCCCCCGCACCCC
GGCAGAATTAGCGCAGGTCAAGGGATTCCCCGGTCGATCCCAGGGTGCCACCAAACGCTGGTTCCGCATCATCACCCGGG
CGCTCAAATCCCCTCGCAGGAACTGGCCAAAGCCTCAGCAGCGCAAGGACGGCATCCCCGATCGTCGCGCGTGGGCGTCC
TACTACCCAGAAGAGCACGAAGTGCTCCAAGAGATTAGAGCGCTTATCGACGACCTCGCCGCCGATATCAACGTTCCCGG
CGAGAATATCCTTCAGCCTTCAACTCTGCGAGTAGCTGTGTGGATGGCTAAACACACCGGCGAGATCCATAATGCTGAAA
CACTCAACGCTGTACTTCGCGATTATGGTGCCCGCCAGTGGCAAATTGACCAGACTTTTCCGATTCTGTCCGCCAACTTG
CTGAAGCTCTAA

Upstream 100 bases:

>100_bases
GACCTCACCGCGCATGTTGAAGCGTTCGCAGCAGTGCTTGCCTCTGTTGCTGGACTTCCCCCAGAGGGCGTCACCGAACT
ACGAAGGTAGATTGGACACC

Downstream 100 bases:

>100_bases
ACCTAAAGCCCGCGGCTAAGGCTGCGGGCTTCGGTGGAGGGCGGCGTCGATAAGCAGGGTTTTATTCCCCGAACAGGGAA
TCCAGCCATCCAACAACAGT

Product: ribonuclease D protein

Products: NA

Alternate protein names: RNase D [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MVSDLLQPRDGIPPLLSTPGEFTAAADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQAL
KPVLNGQEWIIHAASTDLPSLAWLDLHPGLLFDTELAGRLAGFDHVNLAAMVEQIFDLHLLKGHGSEDWSKRPLPESWLN
YAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVDQFATMTEPSETSWQDLKGLSTLKRPDQLVVAREMWLERDSFA
ASRDLAPGKVLSNKVIVEVARVLPRTPAELAQVKGFPGRSQGATKRWFRIITRALKSPRRNWPKPQQRKDGIPDRRAWAS
YYPEEHEVLQEIRALIDDLAADINVPGENILQPSTLRVAVWMAKHTGEIHNAETLNAVLRDYGARQWQIDQTFPILSANL
LKL

Sequences:

>Translated_403_residues
MVSDLLQPRDGIPPLLSTPGEFTAAADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQAL
KPVLNGQEWIIHAASTDLPSLAWLDLHPGLLFDTELAGRLAGFDHVNLAAMVEQIFDLHLLKGHGSEDWSKRPLPESWLN
YAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVDQFATMTEPSETSWQDLKGLSTLKRPDQLVVAREMWLERDSFA
ASRDLAPGKVLSNKVIVEVARVLPRTPAELAQVKGFPGRSQGATKRWFRIITRALKSPRRNWPKPQQRKDGIPDRRAWAS
YYPEEHEVLQEIRALIDDLAADINVPGENILQPSTLRVAVWMAKHTGEIHNAETLNAVLRDYGARQWQIDQTFPILSANL
LKL
>Mature_403_residues
MVSDLLQPRDGIPPLLSTPGEFTAAADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQAL
KPVLNGQEWIIHAASTDLPSLAWLDLHPGLLFDTELAGRLAGFDHVNLAAMVEQIFDLHLLKGHGSEDWSKRPLPESWLN
YAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVDQFATMTEPSETSWQDLKGLSTLKRPDQLVVAREMWLERDSFA
ASRDLAPGKVLSNKVIVEVARVLPRTPAELAQVKGFPGRSQGATKRWFRIITRALKSPRRNWPKPQQRKDGIPDRRAWAS
YYPEEHEVLQEIRALIDDLAADINVPGENILQPSTLRVAVWMAKHTGEIHNAETLNAVLRDYGARQWQIDQTFPILSANL
LKL

Specific function: Cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3' maturation of several stable RNAs [H]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HRDC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR002121
- InterPro:   IPR010997
- InterPro:   IPR006292
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00570 HRDC [H]

EC number: =3.1.13.5 [H]

Molecular weight: Translated: 45362; Mature: 45362

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50967 HRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSDLLQPRDGIPPLLSTPGEFTAAADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRR
CCCCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEEC
GSGTLLFDPEQFRPELTQALKPVLNGQEWIIHAASTDLPSLAWLDLHPGLLFDTELAGRL
CCCCEEECHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEECHHHHHHH
AGFDHVNLAAMVEQIFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DQQGKLPWAEQEFVHIVDQFATMTEPSETSWQDLKGLSTLKRPDQLVVAREMWLERDSFA
HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ASRDLAPGKVLSNKVIVEVARVLPRTPAELAQVKGFPGRSQGATKRWFRIITRALKSPRR
HHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
NWPKPQQRKDGIPDRRAWASYYPEEHEVLQEIRALIDDLAADINVPGENILQPSTLRVAV
CCCCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEE
WMAKHTGEIHNAETLNAVLRDYGARQWQIDQTFPILSANLLKL
EEHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHCC
>Mature Secondary Structure
MVSDLLQPRDGIPPLLSTPGEFTAAADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRR
CCCCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEEEEEEEC
GSGTLLFDPEQFRPELTQALKPVLNGQEWIIHAASTDLPSLAWLDLHPGLLFDTELAGRL
CCCCEEECHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEECHHHHHHH
AGFDHVNLAAMVEQIFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEIL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DQQGKLPWAEQEFVHIVDQFATMTEPSETSWQDLKGLSTLKRPDQLVVAREMWLERDSFA
HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ASRDLAPGKVLSNKVIVEVARVLPRTPAELAQVKGFPGRSQGATKRWFRIITRALKSPRR
HHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
NWPKPQQRKDGIPDRRAWASYYPEEHEVLQEIRALIDDLAADINVPGENILQPSTLRVAV
CCCCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEE
WMAKHTGEIHNAETLNAVLRDYGARQWQIDQTFPILSANLLKL
EEHHHCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]